Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
3.4k
views
Comment: C: Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
4.6 years ago lirongrossmann ▴ 80
0
votes
6
replies
3.4k
views
Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
singlecell singlecellexperiment umap singleR
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 80
0
votes
0
replies
3.4k
views
Comment: C: Cluster location in UMAP using SingleCellExperiment and SingleR
4.6 years ago lirongrossmann ▴ 80
0
votes
0
replies
1.8k
views
Comment: C: Raw counts for reference dataset in single cell rnaseq
4.6 years ago lirongrossmann ▴ 80
1
vote
3
replies
1.8k
views
Raw counts for reference dataset in single cell rnaseq
single cell celldex singleR
updated 4.6 years ago by ★ 28k • written 4.6 years ago by ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: marker genes in single cell experiment
4.6 years ago lirongrossmann ▴ 80
0
votes
0
replies
1.9k
views
Comment: C: most correlated genes in SingleR
4.6 years ago lirongrossmann ▴ 80
0
votes
0
replies
974
views
Single cell WGS and ATAC-seq tools
single cell singlecellexperiment atac seq WGS
4.6 years ago lirongrossmann ▴ 80
0
votes
0
replies
3.3k
views
Comment: C: Trajectory analysis for single cell sequencing
4.6 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.3k
views
Comment: C: Trajectory analysis for single cell sequencing
4.6 years ago lirongrossmann ▴ 80
0
votes
1
reply
1.5k
views
Handling outliers in Deseq2
outliers deseq2 logfoldchange
7.2 years ago lirongrossmann ▴ 80
9
votes
2
replies
6.3k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold deseq2
updated 7.2 years ago by 43k • written 7.3 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Base mean count threshold
deseq2 base
updated 7.2 years ago by 43k • written 7.3 years ago by ▴ 80
0
votes
1
reply
3.7k
views
Comment: C: Batch effect removal with Deseq2
7.3 years ago lirongrossmann ▴ 80
1
vote
3
replies
3.7k
views
Batch effect removal with Deseq2
deseq2 batch effect removebatcheffect() limma
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 80
2
votes
2
replies
5.6k
views
choosing the normalization method (rlog, variance stabilizing transformation)
variancestabilizingtransformation rlog transformation deseq2
updated 16 months ago by • 0 • written 7.3 years ago by ▴ 80
1
vote
2
replies
2.0k
views
an unexplained phenomenon using variance stabilizing transformation for downstream analysis
variancestabilizingtransformation normalization
7.3 years ago lirongrossmann ▴ 80
0
votes
0
replies
2.0k
views
Answer: A: an unexplained phenomenon using variance stabilizing transformation for downstre
7.3 years ago lirongrossmann ▴ 80
1
vote
1
reply
855
views
NA adjp with extremely low p value
deseq2 adjusted pvalue
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Distribution of transformed data using VST
variancestabilizingtransformation deseq2
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 80
0
votes
1
reply
557
views
Deseq2 for small matched samples
deseq2
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 80
0
votes
1
reply
2.1k
views
Comment: C: calculating logfold change from variance stabilizing transformation
7.4 years ago lirongrossmann ▴ 80
0
votes
1
reply
2.1k
views
Comment: C: calculating logfold change from variance stabilizing transformation
7.4 years ago lirongrossmann ▴ 80
2
votes
5
replies
2.1k
views
calculating logfold change from variance stabilizing transformation
deseq2 logfoldchange variancestabilizingtransformation
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 80
0
votes
0
replies
3.3k
views
Comment: C: comparing strand-specific counts to unstranded counts
7.4 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.3k
views
Comment: C: comparing strand-specific counts to unstranded counts
7.4 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.3k
views
Comment: C: comparing strand-specific counts to unstranded counts
7.4 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.3k
views
Comment: A: comparing strand-specific counts to unstranded counts
7.4 years ago lirongrossmann ▴ 80
2
votes
8
replies
3.3k
views
comparing strand-specific counts to unstranded counts
rnaseq strand deseq2
7.4 years ago lirongrossmann ▴ 80
0
votes
1
reply
2.8k
views
Comment: C: Quantile normalization and Deseq2
7.4 years ago lirongrossmann ▴ 80
0
votes
3
replies
2.8k
views
Quantile normalization and Deseq2
quantile normalization deseq2
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 80
12
votes
1
reply
8.1k
views
identifying the samples on plotPCA
deseq2 plotpca PCa
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 80
1
vote
4
replies
2.2k
views
expression matrix with varianceStabilizingTransformation
deseq2 variancestabilizingtransformation rnaseq
updated 7.4 years ago by 43k • written 7.5 years ago by ▴ 80
0
votes
1
reply
2.2k
views
Comment: C: expression matrix with varianceStabilizingTransformation
updated 7.4 years ago by 43k • written 7.5 years ago by ▴ 80
0
votes
0
replies
2.2k
views
Comment: C: expression matrix with varianceStabilizingTransformation
7.5 years ago lirongrossmann ▴ 80
0
votes
1
reply
1.6k
views
Comment: C: differential splicing events and covariates
7.5 years ago lirongrossmann ▴ 80
0
votes
3
replies
1.6k
views
differential splicing events and covariates
limma rna-seq alternative splicing
updated 7.5 years ago by 52k • written 7.5 years ago by ▴ 80
0
votes
0
replies
3.8k
views
Comment: C: Different PCA plots using rlog and vsd on the same data set
7.5 years ago lirongrossmann ▴ 80
0
votes
0
replies
3.0k
views
Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
7.5 years ago lirongrossmann ▴ 80
0
votes
0
replies
3.0k
views
Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
7.5 years ago lirongrossmann ▴ 80
0
votes
4
replies
3.0k
views
RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
rangedsummarizedexperiment deseqdatasetfrommatrix deseq2 tximport
7.5 years ago lirongrossmann ▴ 80
0
votes
0
replies
3.8k
views
Comment: A: Different PCA plots using rlog and vsd on the same data set
7.5 years ago lirongrossmann ▴ 80
0
votes
6
replies
3.8k
views
Different PCA plots using rlog and vsd on the same data set
deseq2 rlog variancestabilizingtransformation plotpca pca
7.5 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.4k
views
Comment: A: Choosing genes for clustering
7.5 years ago lirongrossmann ▴ 80
0
votes
5
replies
3.4k
views
Choosing genes for clustering
limma clustering differential gene expression hierarchical clustering feature selection
7.6 years ago • updated 7.5 years ago lirongrossmann ▴ 80
0
votes
1
reply
3.8k
views
Comment: A: Different PCA plots using rlog and vsd on the same data set
7.5 years ago lirongrossmann ▴ 80
0
votes
1
reply
1.9k
views
Comment: C: Selecting genes that best separate between two groups
updated 7.5 years ago by 52k • written 7.5 years ago by ▴ 80
1
vote
3
replies
1.9k
views
Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
7.5 years ago lirongrossmann ▴ 80
0
votes
0
replies
3.4k
views
Comment: A: Choosing genes for clustering
7.5 years ago lirongrossmann ▴ 80
0
votes
0
replies
1.1k
views
Combined strand specific and unstranded samples
strand rnaseq differential gene expression batch effect counts
7.5 years ago lirongrossmann ▴ 80
56 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6