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Comment: Comment: DESeq2 output used for PCA plot on R studio
1 hour ago swbarnes2 ★ 1.3k
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168
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
8 days ago swbarnes2 ★ 1.3k
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163
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Answer: Answer: Design Matrix within group comparison more than two groups
11 days ago swbarnes2 ★ 1.3k
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337
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Comment: Comment: DESEQ2 Batch Effect
7 weeks ago swbarnes2 ★ 1.3k
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337
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Answer: Answer: DESEQ2 Batch Effect
7 weeks ago swbarnes2 ★ 1.3k
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348
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
7 weeks ago swbarnes2 ★ 1.3k
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0
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348
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Answer: Answer: LOG2FC DESEQ2
11 weeks ago swbarnes2 ★ 1.3k
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1
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531
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
12 weeks ago swbarnes2 ★ 1.3k
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0
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242
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Answer: Answer: Comparing one group against multiple groups in DESeq2
3 months ago swbarnes2 ★ 1.3k
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531
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
3 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
4 months ago swbarnes2 ★ 1.3k
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1
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531
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Answer: Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
4 months ago swbarnes2 ★ 1.3k
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1
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439
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Answer: Answer: 'Subtracting' counts on basis of Negative control media and water samples
4 months ago swbarnes2 ★ 1.3k
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1
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804
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Comment: Comment: DESeq2 Normalization with 4 Groups
6 months ago swbarnes2 ★ 1.3k
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0
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760
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Comment: Comment: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.3k
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760
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Answer: Answer: Two factor design including interaction effect with DESeq2 in R
6 months ago swbarnes2 ★ 1.3k
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836
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Comment: Comment: DESeq2: Design model includes sex but only one female
6 months ago swbarnes2 ★ 1.3k
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0
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406
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Comment: Comment: Issues with ddseq2 for treatment response factoring in different KO clones
6 months ago swbarnes2 ★ 1.3k
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0
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407
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Answer: Answer: DeSeq2 data comparison and extracting outputs
6 months ago swbarnes2 ★ 1.3k
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1
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475
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Answer: Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
7 months ago swbarnes2 ★ 1.3k
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0
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641
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Comment: Comment: How to use contrast with multiple treatments?
7 months ago swbarnes2 ★ 1.3k
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564
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Answer: Answer: How to properly compare the group-specific samples using DEseq2
7 months ago swbarnes2 ★ 1.3k
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1
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641
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Comment: Comment: How to use contrast with multiple treatments?
7 months ago swbarnes2 ★ 1.3k
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0
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846
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Comment: Comment: Handle zero effective gene length when tximport RSEM results
7 months ago swbarnes2 ★ 1.3k
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1.4k
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Comment: Comment: PCA percent variance DESeq2
7 months ago swbarnes2 ★ 1.3k
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0
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675
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Answer: Answer: DESeq2 batch design
8 months ago swbarnes2 ★ 1.3k
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1
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846
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Answer: Answer: Handle zero effective gene length when tximport RSEM results
8 months ago swbarnes2 ★ 1.3k
1
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1
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1.4k
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Comment: Comment: PCA percent variance DESeq2
8 months ago swbarnes2 ★ 1.3k
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0
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1.3k
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Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.3k
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1
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1.3k
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Answer: Answer: Question about RNAseq analysis in EdgeR to identify common and donor specific di
9 months ago swbarnes2 ★ 1.3k
0
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0
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766
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Comment: Comment: DESeq2 design formula
9 months ago swbarnes2 ★ 1.3k
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0
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607
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Comment: Comment: DESeq2 on multilevel design variable
10 months ago swbarnes2 ★ 1.3k
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0
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771
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Comment: Comment: Error: biomaRt has encountered an unexpected server error.
11 months ago swbarnes2 ★ 1.3k
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0
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576
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Answer: Answer: DESeq2 about comparasion of gene expression change on two-time points between t
11 months ago swbarnes2 ★ 1.3k
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0
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935
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Comment: Comment: Subsetting DESeq data set to compare treatments within one group (multi-group ex
11 months ago swbarnes2 ★ 1.3k
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0
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534
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Answer: Answer: Accounting for technical replicates in DESeq2
11 months ago swbarnes2 ★ 1.3k
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0
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478
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Answer: Answer: DESeq2 design formula
12 months ago swbarnes2 ★ 1.3k
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0
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876
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Answer: Answer: Combine RNA-seq
12 months ago swbarnes2 ★ 1.3k
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0
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665
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Answer: Answer: How to import dataset from other software into DESeq2?
12 months ago swbarnes2 ★ 1.3k
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0
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444
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Answer: Answer: DESeq2 statistical model construction
12 months ago swbarnes2 ★ 1.3k
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1
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613
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Answer: Answer: Compare and filter three BAM files
13 months ago swbarnes2 ★ 1.3k
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0
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499
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Comment: Comment: DESeq2 with temporal data and different treatments
13 months ago swbarnes2 ★ 1.3k
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1
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743
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Comment: Comment: How do I design my DESEQ experiment?
13 months ago swbarnes2 ★ 1.3k
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1
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743
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Answer: Answer: How do I design my DESEQ experiment?
13 months ago swbarnes2 ★ 1.3k
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0
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830
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Answer: Answer: DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large
13 months ago swbarnes2 ★ 1.3k
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1
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655
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Answer: Answer: RNAseq high padj value from validated samples?
14 months ago swbarnes2 ★ 1.3k
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0
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1.5k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
14 months ago swbarnes2 ★ 1.3k
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1
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2.1k
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Answer: Answer: DESeq2 and heatmap for multiple comparisons
14 months ago swbarnes2 ★ 1.3k
0
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0
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538
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Answer: Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
14 months ago swbarnes2 ★ 1.3k
0
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0
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904
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Comment: Comment: Error running DESeq2 on longitudinal data: Error in checkFullRank(modelMatrix)
15 months ago swbarnes2 ★ 1.3k
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