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1
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Answer:
Answer: Selection of correct coefficients or contrasts in DESeq2
8 days ago
swbarnes2
★ 1.4k
0
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0
replies
256
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Answer:
Answer: DESeq2 Heatmap
20 days ago
swbarnes2
★ 1.4k
0
votes
0
replies
185
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Answer:
Answer: Want numbers in DESeq to be seen as numerical, not categorical
29 days ago
swbarnes2
★ 1.4k
0
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1
reply
538
views
Answer:
Answer: p value is 0, padj is 0
7 weeks ago
swbarnes2
★ 1.4k
0
votes
1
reply
839
views
Comment:
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
8 weeks ago
swbarnes2
★ 1.4k
0
votes
0
replies
662
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Answer:
Answer: Handling biological replicates in DESeq2
12 weeks ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Answer:
Answer: Volcano plot has many values around zero
12 weeks ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
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Comment:
Comment: Volcano plot has many values around zero
12 weeks ago
swbarnes2
★ 1.4k
0
votes
0
replies
252
views
Answer:
Answer: How to adjust the DESeq2 formula when there is no control group for one factor?
3 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
610
views
Comment:
Comment: DESeq2 design and contrasts with 2 drug-treated and one control group
4 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
773
views
Comment:
Comment: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
4 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
572
views
Answer:
Answer: PCA analysis RNA-Seq QC looks strange?
4 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
996
views
Answer:
Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
5 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
608
views
Answer:
Answer: Differential expression analysis in time course experiments with DESeq2
5 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.2k
views
Answer:
Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
5 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.6k
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Comment:
Comment: Deseq2 design formula and analysis with internal controls
5 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.6k
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Comment:
Comment: Deseq2 design formula and analysis with internal controls
6 months ago
swbarnes2
★ 1.4k
1
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1
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1.6k
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Answer:
Answer: Deseq2 design formula and analysis with internal controls
6 months ago
swbarnes2
★ 1.4k
1
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1
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1.1k
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Answer:
Answer: DGE with a Continuous Variable
6 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
390
views
Answer:
Answer: Can we compare 3 different experimental conditions with DESeq2?
8 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
422
views
Answer:
Answer: Best way to describe DEseq2 design
8 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
804
views
Answer:
Answer: Counter-directional LFC shrinkage
8 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.2k
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Comment:
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
8 months ago
swbarnes2
★ 1.4k
0
votes
1
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1.3k
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Comment:
Comment: deseq2 results
9 months ago
swbarnes2
★ 1.4k
1
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1
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1.3k
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Comment:
Comment: deseq2 results
9 months ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.3k
views
Comment:
Comment: deseq2 results
9 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
785
views
Answer:
Answer: Once again a "Model matrix not full rank"
9 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.6k
views
Comment:
Comment: DESeq2 output used for PCA plot on R studio
9 months ago
swbarnes2
★ 1.4k
0
votes
2
replies
1.6k
views
Comment:
Comment: DESeq2 output used for PCA plot on R studio
9 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
832
views
Answer:
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
9 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.6k
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Comment:
Comment: DESeq2 output used for PCA plot on R studio
9 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
492
views
Answer:
Answer: Interaction Terms in DESeq2 - Shrinkage
9 months ago
swbarnes2
★ 1.4k
1
vote
1
reply
547
views
Answer:
Answer: Design Matrix within group comparison more than two groups
9 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
760
views
Comment:
Comment: DESEQ2 Batch Effect
11 months ago
swbarnes2
★ 1.4k
1
vote
1
reply
760
views
Answer:
Answer: DESEQ2 Batch Effect
11 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
793
views
Answer:
Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
11 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
796
views
Answer:
Answer: LOG2FC DESEQ2
12 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Comment:
Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
12 months ago
swbarnes2
★ 1.4k
2
votes
0
replies
774
views
Answer:
Answer: Comparing one group against multiple groups in DESeq2
12 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Comment:
Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
12 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
2.6k
views
Answer:
Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
13 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.1k
views
Answer:
Answer: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
13 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
959
views
Answer:
Answer: 'Subtracting' counts on basis of Negative control media and water samples
14 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
1.8k
views
Comment:
Comment: DESeq2 Normalization with 4 Groups
15 months ago
swbarnes2
★ 1.4k
1
vote
0
replies
1.9k
views
Comment:
Comment: Two factor design including interaction effect with DESeq2 in R
15 months ago
swbarnes2
★ 1.4k
1
vote
1
reply
1.9k
views
Answer:
Answer: Two factor design including interaction effect with DESeq2 in R
15 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
1.4k
views
Comment:
Comment: DESeq2: Design model includes sex but only one female
16 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
687
views
Comment:
Comment: Issues with ddseq2 for treatment response factoring in different KO clones
16 months ago
swbarnes2
★ 1.4k
0
votes
0
replies
734
views
Answer:
Answer: DeSeq2 data comparison and extracting outputs
16 months ago
swbarnes2
★ 1.4k
0
votes
1
reply
804
views
Answer:
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
16 months ago
swbarnes2
★ 1.4k
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