Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
0
replies
560
views
Answer: Answer: DESeq2 interactions
4 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
373
views
Comment: Comment: 3-factor DESeq2 trime-series analysis
4 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
509
views
Answer: Answer: Differential expression on the transcript-level
6 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.8k
views
Comment: Comment: RNA-seq: TPM batch effect correction
7 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: Interaction in Design Experimental
7 months ago swbarnes2 ★ 1.4k
0
votes
2
replies
1.9k
views
Comment: Comment: Discrepancies in normalised count data vs unnormalised
8 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.9k
views
Comment: Comment: Discrepancies in normalised count data vs unnormalised
8 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Comment: Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
8 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
8 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: Comparison of results obtained from a subset of the data versus the complete dat
9 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
739
views
Answer: Answer: Interpreting DESEQ2 interaction term and inclusion of covariate
11 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
761
views
Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: DESeq2 Heatmap
12 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
375
views
Answer: Answer: Want numbers in DESeq to be seen as numerical, not categorical
12 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: p value is 0, padj is 0
13 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
13 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Answer: Answer: Handling biological replicates in DESeq2
14 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Answer: Answer: Volcano plot has many values around zero
14 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: Volcano plot has many values around zero
14 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
450
views
Answer: Answer: How to adjust the DESeq2 formula when there is no control group for one factor?
15 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: DESeq2 design and contrasts with 2 drug-treated and one control group
16 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
16 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
885
views
Answer: Answer: PCA analysis RNA-Seq QC looks strange?
16 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
17 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.0k
views
Answer: Answer: Differential expression analysis in time course experiments with DESeq2
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Answer: Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Comment: Comment: Deseq2 design formula and analysis with internal controls
17 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Comment: Comment: Deseq2 design formula and analysis with internal controls
18 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.7k
views
Answer: Answer: Deseq2 design formula and analysis with internal controls
18 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.0k
views
Answer: Answer: DGE with a Continuous Variable
18 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
773
views
Answer: Answer: Can we compare 3 different experimental conditions with DESeq2?
19 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
753
views
Answer: Answer: Best way to describe DEseq2 design
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Answer: Answer: Counter-directional LFC shrinkage
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.1k
views
Comment: Comment: deseq2 results
20 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.1k
views
Comment: Comment: deseq2 results
20 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
2.1k
views
Comment: Comment: deseq2 results
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.3k
views
Answer: Answer: Once again a "Model matrix not full rank"
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.9k
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
21 months ago swbarnes2 ★ 1.4k
0
votes
2
replies
2.9k
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
21 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
21 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.9k
views
Comment: Comment: DESeq2 output used for PCA plot on R studio
21 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
838
views
Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
21 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
857
views
Answer: Answer: Design Matrix within group comparison more than two groups
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: DESEQ2 Batch Effect
23 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.2k
views
Answer: Answer: DESEQ2 Batch Effect
23 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
23 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: LOG2FC DESEQ2
24 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
24 months ago swbarnes2 ★ 1.4k
2
votes
0
replies
1.1k
views
Answer: Answer: Comparing one group against multiple groups in DESeq2
2.0 years ago swbarnes2 ★ 1.4k
475 results • Page 1 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6