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Answer: Answer: DESeq2 interactions
8 weeks ago swbarnes2 ★ 1.4k
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Comment: Comment: 3-factor DESeq2 trime-series analysis
8 weeks ago swbarnes2 ★ 1.4k
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Answer: Answer: Differential expression on the transcript-level
3 months ago swbarnes2 ★ 1.4k
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Comment: Comment: RNA-seq: TPM batch effect correction
4 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Interaction in Design Experimental
5 months ago swbarnes2 ★ 1.4k
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
5 months ago swbarnes2 ★ 1.4k
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Comment: Comment: Discrepancies in normalised count data vs unnormalised
6 months ago swbarnes2 ★ 1.4k
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Comment: Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
6 months ago swbarnes2 ★ 1.4k
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Answer: Answer: DESEQ2 - Correctly altering log2foldchange when switching comparison direction (
6 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Comparison of results obtained from a subset of the data versus the complete dat
7 months ago swbarnes2 ★ 1.4k
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641
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Answer: Answer: Interpreting DESEQ2 interaction term and inclusion of covariate
8 months ago swbarnes2 ★ 1.4k
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685
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Answer: Answer: Selection of correct coefficients or contrasts in DESeq2
9 months ago swbarnes2 ★ 1.4k
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925
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Answer: Answer: DESeq2 Heatmap
10 months ago swbarnes2 ★ 1.4k
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336
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Answer: Answer: Want numbers in DESeq to be seen as numerical, not categorical
10 months ago swbarnes2 ★ 1.4k
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Answer: Answer: p value is 0, padj is 0
11 months ago swbarnes2 ★ 1.4k
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1.3k
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Comment: Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
11 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Handling biological replicates in DESeq2
12 months ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: Volcano plot has many values around zero
12 months ago swbarnes2 ★ 1.4k
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1.6k
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Comment: Comment: Volcano plot has many values around zero
12 months ago swbarnes2 ★ 1.4k
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Answer: Answer: How to adjust the DESeq2 formula when there is no control group for one factor?
13 months ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 design and contrasts with 2 drug-treated and one control group
13 months ago swbarnes2 ★ 1.4k
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994
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Comment: Comment: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
13 months ago swbarnes2 ★ 1.4k
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Answer: Answer: PCA analysis RNA-Seq QC looks strange?
14 months ago swbarnes2 ★ 1.4k
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1.6k
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Answer: Answer: Understanding Contrasts and Interaction in DESeq2 for 2 genotypes, 2 treatments
14 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Differential expression analysis in time course experiments with DESeq2
14 months ago swbarnes2 ★ 1.4k
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Answer: Answer: DESeq2: How to Compare the Condition Effects of Two Different Treatments?
15 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
15 months ago swbarnes2 ★ 1.4k
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2.5k
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Comment: Comment: Deseq2 design formula and analysis with internal controls
15 months ago swbarnes2 ★ 1.4k
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2.5k
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Answer: Answer: Deseq2 design formula and analysis with internal controls
15 months ago swbarnes2 ★ 1.4k
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1.8k
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Answer: Answer: DGE with a Continuous Variable
16 months ago swbarnes2 ★ 1.4k
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688
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Answer: Answer: Can we compare 3 different experimental conditions with DESeq2?
17 months ago swbarnes2 ★ 1.4k
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662
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Answer: Answer: Best way to describe DEseq2 design
17 months ago swbarnes2 ★ 1.4k
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Answer: Answer: Counter-directional LFC shrinkage
17 months ago swbarnes2 ★ 1.4k
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1.6k
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Comment: Comment: Numerical differences in DESeq2 output depending on different design matrix cons
18 months ago swbarnes2 ★ 1.4k
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1.9k
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Comment: Comment: deseq2 results
18 months ago swbarnes2 ★ 1.4k
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1.9k
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Comment: Comment: deseq2 results
18 months ago swbarnes2 ★ 1.4k
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1.9k
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Comment: Comment: deseq2 results
18 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: Once again a "Model matrix not full rank"
18 months ago swbarnes2 ★ 1.4k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
18 months ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
18 months ago swbarnes2 ★ 1.4k
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1.0k
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Answer: Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
18 months ago swbarnes2 ★ 1.4k
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2.7k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
18 months ago swbarnes2 ★ 1.4k
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735
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Answer: Answer: Interaction Terms in DESeq2 - Shrinkage
19 months ago swbarnes2 ★ 1.4k
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780
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Answer: Answer: Design Matrix within group comparison more than two groups
19 months ago swbarnes2 ★ 1.4k
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Comment: Comment: DESEQ2 Batch Effect
20 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: DESEQ2 Batch Effect
20 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: Is DESeq2 normalisation appropriate when counts were obtained for a small number
20 months ago swbarnes2 ★ 1.4k
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1.1k
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Answer: Answer: LOG2FC DESEQ2
21 months ago swbarnes2 ★ 1.4k
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1.4k
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Comment: Comment: Deseq2 Coefficients from resultsNames() not reflecting all coefficient possibili
21 months ago swbarnes2 ★ 1.4k
2
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993
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Answer: Answer: Comparing one group against multiple groups in DESeq2
21 months ago swbarnes2 ★ 1.4k
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