Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
4.6k
views
Comment: Comment: Problem with DESeq2 installation using in R 1.4.1717
4.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.9k
views
Comment: Comment: DeSEq2-- error- count matrix
4.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.4k
views
Comment: Comment: How to correlate bp and Chr columns in the corresponding RSID column?
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: tximport fails when RSEM output options produce files with additional columns?
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.7k
views
Answer: Answer: DESeq2 question: why I got discrepancy results for DEGs when using different way
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.8k
views
Answer: Answer: undefined columns selected
4.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1000
views
Answer: Answer: Doing multiple comparisons in a DESeq2 object with multiple conditions
4.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: Comment: extract fold change of a list of gene from EdgeR?
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.0k
views
Comment: Comment: Error: $ operator is invalid for atomic vectors
4.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.4k
views
Comment: Comment: extract fold change of a list of gene from EdgeR?
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.4k
views
Comment: Comment: extract fold change of a list of gene from EdgeR?
4.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.5k
views
Answer: Answer: DESeq2 for longitudinal data
4.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.1k
views
Answer: Answer: No counts, just fold change data
4.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
968
views
Answer: Answer: DESeq2: Paired samples (before and after treatment) with different responses
4.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Comment: Comment: Contrasting LogFCs in DESeq2
4.5 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
901
views
Answer: Answer: How to remove batch effect from multiple rna-seq dataset before running deseq2
4.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: Creating a DESeqDataSet from a RangedSummarizedExperiment - where is the design
4.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.4k
views
Answer: Answer: Contrasting LogFCs in DESeq2
4.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: biomaRt - rice genes database not working
4.5 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
3.0k
views
Answer: Answer: DESeq2 numbers of DEGs not consistent with PCA plot
4.5 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.7k
views
Answer: Answer: Grouping DESEQ2 with additional variable
4.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.4k
views
Answer: Answer: DeSeq2 with 2 conditions and 3 time points
4.5 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
930
views
Answer: Answer: DESEQ2 colData object
4.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.4k
views
Answer: Answer: How to plot gene counts using plotCounts() with just an individual contrast?
4.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Answer: Answer: DESeq2 desing formula for cell fraction and siRNA scramble
4.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
968
views
Answer: Answer: broken link to DESeq
4.5 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
4.2k
views
Comment: Comment: DESeq2 comparison two cell types and two genotypes
4.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
702
views
Correcting partially penetrant batch effect
DESeq2
updated 4.6 years ago by 43k • written 4.6 years ago by ★ 1.4k
1
vote
0
replies
4.2k
views
Comment: Comment: DESeq2 two conditions with interaction
4.6 years ago swbarnes2 ★ 1.4k
0
votes
15
replies
1.8k
views
Comment: Comment: DiffBind DEseq
4.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.8k
views
Comment: Comment: DiffBind DEseq
4.6 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.2k
views
Answer: Answer: is the P value reliable if the counts are Low counts across the sample ?
4.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Answer: Answer: Technical-biological replicates in edgeR
4.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
9.1k
views
Comment: Comment: DESeq2 - multifactorial design
4.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
9.1k
views
Comment: Comment: DESeq2 - multifactorial design
4.7 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
9.1k
views
Answer: Answer: DESeq2 - multifactorial design
4.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
895
views
Answer: Answer: DESeq2 calling DEGs despite detection in few replicates
4.7 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
3.2k
views
Answer: Answer: error when reading fastq file
4.7 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
2.1k
views
Answer: Answer: Batch correction and DESeq2
4.7 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.8k
views
Answer: Answer: How to setup sample design in DESeq2
4.7 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.2k
views
Comment: Comment: I can't get the 2 by 2 comparisons that I need because the matrix is not full of
4.7 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.6k
views
Answer: Answer: DESeq2 in R
4.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.3k
views
Comment: Comment: DEseq2: setting up the correct contrast.
4.8 years ago swbarnes2 ★ 1.4k
0
votes
2
replies
2.5k
views
Comment: Comment: RUVSeq package for adjusting two variables of interest
4.8 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
2.3k
views
Answer: Answer: DEseq2: setting up the correct contrast.
4.8 years ago swbarnes2 ★ 1.4k
1
vote
3
replies
2.6k
views
Answer: Answer: Unable to run "library(DESeq2)" successfully
4.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Comment: Comment: DESeq2 anormally high estimation of Log2FoldChange
4.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Answer: Answer: DESeq2 anormally high estimation of Log2FoldChange
4.8 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Comment: Comment: P adjusted values in Deseq2
4.8 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.5k
views
Comment: Comment: Using the correct counts with lm function linear model
4.8 years ago swbarnes2 ★ 1.4k
475 results • Page 6 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6