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Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
20 months ago swbarnes2 ★ 1.3k
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984
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Comment: Comment: Time course RNA seq with DESeq2
20 months ago swbarnes2 ★ 1.3k
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Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
21 months ago swbarnes2 ★ 1.3k
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1.6k
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Comment: Comment: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.3k
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0
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896
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Comment: Comment: DiffBind: dba.plotPCA() ellipse
22 months ago swbarnes2 ★ 1.3k
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2.6k
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Comment: Comment: Using Age or other numerical variable to model expression in deseq2
22 months ago swbarnes2 ★ 1.3k
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1.1k
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Comment: Comment: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.3k
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2.9k
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Comment: Comment: HTSeq Counts no longer available
24 months ago swbarnes2 ★ 1.3k
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8.3k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
24 months ago swbarnes2 ★ 1.3k
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8.3k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
24 months ago swbarnes2 ★ 1.3k
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2.1k
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Comment: Comment: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.3k
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3.7k
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Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.0 years ago swbarnes2 ★ 1.3k
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759
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Comment: Comment: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.3k
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1.1k
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Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.1 years ago swbarnes2 ★ 1.3k
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8.8k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.1 years ago swbarnes2 ★ 1.3k
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1.2k
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Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
2.2 years ago swbarnes2 ★ 1.3k
0
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1.2k
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Comment: Comment: Multi-factor paired RNAseq differential analysis with DEseq2
2.3 years ago swbarnes2 ★ 1.3k
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1.2k
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Comment: Comment: DE analysis model matrix for paired samples
2.3 years ago swbarnes2 ★ 1.3k
0
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0
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1.6k
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Comment: Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
2.3 years ago swbarnes2 ★ 1.3k
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0
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3.6k
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Comment: Comment: How to remove batch effect from RNA-seq without count data?
2.3 years ago swbarnes2 ★ 1.3k
0
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1
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1.7k
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Comment: Comment: DESeq2 analysis for targeted RNA-seq
2.3 years ago swbarnes2 ★ 1.3k
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6.4k
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Comment: Comment: Adding sample label to PCA plot
2.3 years ago swbarnes2 ★ 1.3k
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0
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1.1k
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Comment: Comment: sigh of log2FC values in DESeq2
2.4 years ago swbarnes2 ★ 1.3k
1
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1
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895
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Comment: Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
2.4 years ago swbarnes2 ★ 1.3k
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0
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752
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Comment: Comment: Troubleshooting DESeq2 Analysis: no DE genes found in subset
2.4 years ago swbarnes2 ★ 1.3k
0
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603
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Comment: Comment: Which interactions terms to choose?
2.5 years ago swbarnes2 ★ 1.3k
0
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0
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1.7k
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Comment: Comment: Rsamtools : Extracting Unmapped Reads from BAM file
2.5 years ago swbarnes2 ★ 1.3k
0
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1
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3.2k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.5 years ago swbarnes2 ★ 1.3k
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1.1k
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Comment: Comment: DESeq2 Design Matrix Two Conditions and Two Treatments
2.5 years ago swbarnes2 ★ 1.3k
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0
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3.7k
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Comment: Comment: Error connecting to external databases through celldex
2.6 years ago swbarnes2 ★ 1.3k
0
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0
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935
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Comment: Comment: How to convert TMM RNA-seq file (generated by edgeR) to list of differentially e
2.6 years ago swbarnes2 ★ 1.3k
0
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.3k
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1.6k
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Comment: Comment: DESeq2 differential expression analysis of protein coding genes only
2.6 years ago swbarnes2 ★ 1.3k
0
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1
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.3k
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1
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1.5k
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Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.3k
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0
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1.1k
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Comment: Comment: Remove genes in a list from cts
2.6 years ago swbarnes2 ★ 1.3k
0
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0
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1.1k
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Comment: Comment: Remove genes in a list from cts
2.6 years ago swbarnes2 ★ 1.3k
0
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0
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921
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Comment: Comment: scRNAseq analysis on multiple datasets
2.6 years ago swbarnes2 ★ 1.3k
0
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1
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1.7k
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Comment: Comment: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
2.6 years ago swbarnes2 ★ 1.3k
0
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1
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1.3k
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Comment: Comment: Understanding output of Negative Binomial in DESeq2
2.6 years ago swbarnes2 ★ 1.3k
0
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1
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4.8k
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Comment: Comment: How does edgeR calculate fold change?
2.7 years ago swbarnes2 ★ 1.3k
0
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0
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598
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Comment: Comment: normalising Biological replicates for differential analysis
2.7 years ago swbarnes2 ★ 1.3k
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1
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598
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Comment: Comment: normalising Biological replicates for differential analysis
2.7 years ago swbarnes2 ★ 1.3k
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850
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Comment: Comment: DESEQ PCA
2.7 years ago swbarnes2 ★ 1.3k
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0
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850
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Comment: Comment: DESEQ PCA
2.7 years ago swbarnes2 ★ 1.3k
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0
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549
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Comment: Comment: DeSeq2_ result different _3 factor level Deseq2 vs 2 factor level Deseq2
2.7 years ago swbarnes2 ★ 1.3k
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2
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Comment: Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
2.8 years ago swbarnes2 ★ 1.3k
0
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1
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2.3k
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Comment: Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
2.8 years ago swbarnes2 ★ 1.3k
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1
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1.4k
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Comment: Comment: Differential Expression analysis of specific list of genes
2.8 years ago swbarnes2 ★ 1.3k
0
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1
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5.7k
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Comment: Comment: package to manipulate GTF files
2.8 years ago swbarnes2 ★ 1.3k
199 results • Page 2 of 4
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