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Answer: Answer: Comparing different method for DESEQ2
19 months ago swbarnes2 ★ 1.3k
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1.6k
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Answer: Answer: No differentially expressed genes after DESeq
19 months ago swbarnes2 ★ 1.3k
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1.7k
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Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
19 months ago swbarnes2 ★ 1.3k
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1.7k
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Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
19 months ago swbarnes2 ★ 1.3k
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1
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4.3k
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Comment: Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
19 months ago swbarnes2 ★ 1.3k
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1
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4.3k
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Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
19 months ago swbarnes2 ★ 1.3k
0
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0
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578
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Answer: Answer: interaction term formula for DESEQ2?
19 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
19 months ago swbarnes2 ★ 1.3k
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1
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480
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Answer: Answer: DESeq2 with incorrect adjusted Pvalues
20 months ago swbarnes2 ★ 1.3k
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1
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749
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Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
20 months ago swbarnes2 ★ 1.3k
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429
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Answer: Answer: ref treatment
20 months ago swbarnes2 ★ 1.3k
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627
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Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
20 months ago swbarnes2 ★ 1.3k
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2.6k
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Answer: Answer: Understanding how to contrast two treatments in DESeq2
20 months ago swbarnes2 ★ 1.3k
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1.6k
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Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
20 months ago swbarnes2 ★ 1.3k
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1
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1.0k
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Answer: Answer: resultsNames(dds) not showing all contrasts
20 months ago swbarnes2 ★ 1.3k
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1
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865
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Answer: Answer: DESEq2 rerun gives different results
20 months ago swbarnes2 ★ 1.3k
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983
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Comment: Comment: Time course RNA seq with DESeq2
20 months ago swbarnes2 ★ 1.3k
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381
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Answer: Answer: DESeq2 comparison of different sample combinations
20 months ago swbarnes2 ★ 1.3k
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0
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409
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Answer: Answer: Batch correction in deseq2
20 months ago swbarnes2 ★ 1.3k
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1.2k
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Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
21 months ago swbarnes2 ★ 1.3k
0
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1
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914
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Answer: Answer: what should be our references when 2 samples which I compare are treated and the
21 months ago swbarnes2 ★ 1.3k
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660
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Answer: Answer: DESeq2 Interaction Term Error Occurred
21 months ago swbarnes2 ★ 1.3k
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1.6k
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Comment: Comment: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.3k
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1
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1.6k
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Answer: Answer: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.3k
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896
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Comment: Comment: DiffBind: dba.plotPCA() ellipse
22 months ago swbarnes2 ★ 1.3k
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1
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931
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Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
22 months ago swbarnes2 ★ 1.3k
2
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1
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2.6k
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Comment: Comment: Using Age or other numerical variable to model expression in deseq2
22 months ago swbarnes2 ★ 1.3k
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1.1k
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Comment: Comment: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.3k
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1.1k
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Answer: Answer: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.3k
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1
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592
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Answer: Answer: DESeq2 changing Interaction term interpretation
23 months ago swbarnes2 ★ 1.3k
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1.5k
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Answer: Answer: Log2FoldChange and normalized count values are not consistent?
23 months ago swbarnes2 ★ 1.3k
2
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0
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1.5k
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Answer: Answer: Difference between raw counts and featureCounts for DESeq2
23 months ago swbarnes2 ★ 1.3k
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1
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812
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Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
23 months ago swbarnes2 ★ 1.3k
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2.9k
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Comment: Comment: HTSeq Counts no longer available
23 months ago swbarnes2 ★ 1.3k
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0
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8.3k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
24 months ago swbarnes2 ★ 1.3k
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1
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8.3k
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Comment: Comment: is it possible to use TPM in DESeq2 ?
24 months ago swbarnes2 ★ 1.3k
0
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1
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3.4k
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Answer: Answer: DESeq2 how to specify contrast to test difference of differences
2.0 years ago swbarnes2 ★ 1.3k
0
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0
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2.1k
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Comment: Comment: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.3k
3
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2
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2.1k
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Answer: Answer: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.3k
0
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0
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3.7k
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Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.0 years ago swbarnes2 ★ 1.3k
0
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0
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538
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Answer: Answer: batch effects for a single sample?
2.1 years ago swbarnes2 ★ 1.3k
0
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0
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788
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Answer: Answer: Getting erros from dds
2.1 years ago swbarnes2 ★ 1.3k
0
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0
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1.4k
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Answer: Answer: DESeq2 comparisons with multiple experimental variables?
2.1 years ago swbarnes2 ★ 1.3k
1
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1
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1.8k
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Answer: Answer: Time series and interaction in DESeq2
2.1 years ago swbarnes2 ★ 1.3k
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0
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759
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Answer: Answer: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.3k
1
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0
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759
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Comment: Comment: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.3k
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1
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1.1k
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Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.1 years ago swbarnes2 ★ 1.3k
0
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1
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8.8k
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Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.1 years ago swbarnes2 ★ 1.3k
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0
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1.2k
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Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
2.2 years ago swbarnes2 ★ 1.3k
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0
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1.6k
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Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
2.2 years ago swbarnes2 ★ 1.3k
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