Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
1
reply
846
views
Comment: Comment: I have a problem when I run DESeq2 with one variable with 8 levels, I can't find
19 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
803
views
Answer: Answer: Modelling batch effect in DESeq2 - how to interpret the results?
19 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.9k
views
Comment: Comment: How to sort SAM file
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Answer: Answer: Comparing different method for DESEQ2
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: No differentially expressed genes after DESeq
19 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.7k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: Different results between Limma and DESEQ2 for Differential Expression Analysis
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.3k
views
Comment: Comment: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
19 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.3k
views
Answer: Answer: Understanding the Log2FoldChange calculated with DESeq2 and according to formula
19 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
582
views
Answer: Answer: interaction term formula for DESEQ2?
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Answer: Answer: Clarification about DESeq2 counts() function when dealing with covariates
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
486
views
Answer: Answer: DESeq2 with incorrect adjusted Pvalues
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
751
views
Answer: Answer: Overwhelmed by DESEq2 options and how to answer my questions.: Two conditions an
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
435
views
Answer: Answer: ref treatment
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
630
views
Answer: Answer: code syntax for DESeq2 to derive DEGs from a complicated contrast or interactio
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Answer: Answer: Understanding how to contrast two treatments in DESeq2
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Comment: Comment: DESeq2 contrasts using all relevant samples vs all samples
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.0k
views
Answer: Answer: resultsNames(dds) not showing all contrasts
20 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
877
views
Answer: Answer: DESEq2 rerun gives different results
20 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
986
views
Comment: Comment: Time course RNA seq with DESeq2
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
389
views
Answer: Answer: DESeq2 comparison of different sample combinations
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
413
views
Answer: Answer: Batch correction in deseq2
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C
21 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
929
views
Answer: Answer: what should be our references when 2 samples which I compare are treated and the
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
663
views
Answer: Answer: DESeq2 Interaction Term Error Occurred
21 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Comment: Comment: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.6k
views
Answer: Answer: DESeqDataSetFromMatrix error
22 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
902
views
Comment: Comment: DiffBind: dba.plotPCA() ellipse
22 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
937
views
Answer: Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
22 months ago swbarnes2 ★ 1.4k
2
votes
1
reply
2.7k
views
Comment: Comment: Using Age or other numerical variable to model expression in deseq2
22 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: I got error message about DESeqDataSetFromMatrix
22 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
596
views
Answer: Answer: DESeq2 changing Interaction term interpretation
23 months ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.5k
views
Answer: Answer: Log2FoldChange and normalized count values are not consistent?
23 months ago swbarnes2 ★ 1.4k
2
votes
0
replies
1.5k
views
Answer: Answer: Difference between raw counts and featureCounts for DESeq2
24 months ago swbarnes2 ★ 1.4k
1
vote
1
reply
817
views
Answer: Answer: DESeq2 paired design: Differential list comparing fold changes
24 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.9k
views
Comment: Comment: HTSeq Counts no longer available
24 months ago swbarnes2 ★ 1.4k
0
votes
0
replies
8.4k
views
Comment: Comment: is it possible to use TPM in DESeq2 ?
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
8.4k
views
Comment: Comment: is it possible to use TPM in DESeq2 ?
2.0 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.4k
views
Answer: Answer: DESeq2 how to specify contrast to test difference of differences
2.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.1k
views
Comment: Comment: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.4k
3
votes
2
replies
2.1k
views
Answer: Answer: DESeq2::plotPCA plotting error
2.0 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.8k
views
Comment: Comment: Best way to do RNA-seq analysis for a small number of samples obtained from 2 di
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
545
views
Answer: Answer: batch effects for a single sample?
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
795
views
Answer: Answer: Getting erros from dds
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.5k
views
Answer: Answer: DESeq2 comparisons with multiple experimental variables?
2.1 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.8k
views
Answer: Answer: Time series and interaction in DESeq2
2.1 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
770
views
Answer: Answer: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
770
views
Comment: Comment: Setting up read count data for DESeq2 to create a dds object
2.1 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.2 years ago swbarnes2 ★ 1.4k
442 results • Page 3 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6