Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.1k
views
Comment: Comment: ScRNA sequencing data _Seurat_Object_DESEQ2_Analayis_DGE
2.2 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
8.9k
views
Comment: Comment: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Answer: Answer: Understandig listValues argument of DESEQ in multiple group comparisons
2.2 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: Multi-factor paired RNAseq differential analysis with DEseq2
2.3 years ago swbarnes2 ★ 1.4k
0
votes
2
replies
1.2k
views
Answer: Answer: Multi-factor paired RNAseq differential analysis with DEseq2
2.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.2k
views
Comment: Comment: DE analysis model matrix for paired samples
2.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.6k
views
Comment: Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp
2.3 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.6k
views
Comment: Comment: How to remove batch effect from RNA-seq without count data?
2.3 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: DESeq2 analysis for targeted RNA-seq
2.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
6.5k
views
Comment: Comment: Adding sample label to PCA plot
2.4 years ago swbarnes2 ★ 1.4k
2
votes
0
replies
2.2k
views
Answer: Answer: Start to End RNA-Seq with R Bioconductor
2.4 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: sigh of log2FC values in DESeq2
2.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
4.0k
views
Answer: Answer: Deseq2 normalization for WGCNA
2.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.9k
views
Answer: Answer: DESeq2 - batch, condition and tissue information
2.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.5k
views
Answer: Answer: NA values for mitochondrial gene percentage
2.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
1.2k
views
Answer: Answer: Design formula in DESeq2
2.4 years ago swbarnes2 ★ 1.4k
1
vote
1
reply
901
views
Comment: Comment: DESEQ2 Results log2fold and pvalue changes after removing genes
2.4 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Answer: Answer: tximport question on what counts to use for LogFC calculations
2.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
762
views
Comment: Comment: Troubleshooting DESeq2 Analysis: no DE genes found in subset
2.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
679
views
Answer: Answer: DESeq2: Difference between two groups of conditions
2.5 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.5k
views
Answer: Answer: Which rlog should I use for DESeq2 analysis
2.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
607
views
Comment: Comment: Which interactions terms to choose?
2.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
742
views
Answer: Answer: Complex Contrast in DESeq2
2.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.0k
views
Answer: Answer: DESeq2 interaction terms in 2x2x2 factorial design
2.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.8k
views
Comment: Comment: Rsamtools : Extracting Unmapped Reads from BAM file
2.5 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
868
views
Answer: Answer: DESeq2 ratio of ratios and p-value
2.5 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
3.2k
views
Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
2.6 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
1.4k
views
Answer: Answer: Batch effect from to sequencing data at differents depths
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
791
views
Answer: Answer: results() function and finding the difference of differences
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: DESeq2 PlotCounts() function
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: DESeq2 Design Matrix Two Conditions and Two Treatments
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.1k
views
Answer: Answer: DESeq2 Design Matrix Two Conditions and Two Treatments
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
3.7k
views
Comment: Comment: Error connecting to external databases through celldex
2.6 years ago swbarnes2 ★ 1.4k
2
votes
2
replies
3.7k
views
Error connecting to external databases through celldex
celldex
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
941
views
Comment: Comment: How to convert TMM RNA-seq file (generated by edgeR) to list of differentially e
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
949
views
Answer: Answer: Is it advisable to input a count matrix that consists of reads aligned using dif
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.6k
views
Comment: Comment: DESeq2 differential expression analysis of protein coding genes only
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.5k
views
Comment: Comment: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.4k
1
vote
0
replies
1.1k
views
Comment: Comment: Remove genes in a list from cts
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.5k
views
Answer: Answer: Three conditions and two time points
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
1.1k
views
Comment: Comment: Remove genes in a list from cts
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.7k
views
Answer: Answer: Question on the fold change estimate
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
929
views
Comment: Comment: scRNAseq analysis on multiple datasets
2.6 years ago swbarnes2 ★ 1.4k
0
votes
0
replies
2.2k
views
Answer: Answer: DESeq2: All samples have 0 counts for all genes. check the counting script
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.7k
views
Comment: Comment: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
2.6 years ago swbarnes2 ★ 1.4k
2
votes
1
reply
1.7k
views
Answer: Answer: Interpretation of DESeq2 results with 3 factorial design with interaction terms.
2.6 years ago swbarnes2 ★ 1.4k
0
votes
1
reply
1.3k
views
Comment: Comment: Understanding output of Negative Binomial in DESeq2
2.7 years ago swbarnes2 ★ 1.4k
443 results • Page 4 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6