... Hi all,
I have a DE gene dataset and I would like to know which TFs have binding sites at the promoters of these genes. I found a list of 615 human TFs on the GSEA website with the genes they bind to, but my DE gene list is too large to manually test. I then thought to create custom GO terms us ...
written 12 days ago by
tkapell • 0
• updated 11 days ago by
lhuang7 • 20
... I am a bit confused with the "lfcshrink" function in DESeq2. I would assume that one would want to use the shrunk result table in subsequent DE gene analysis, but the DESeq2 manual suggests that lfc shrinkage is only used for data visualisation. Could someone clarify how "results" and "lfcshrink" ar ...
... I have a 4 level single factor dataset to analyse with edgeR. I used:
to extract DE genes in the desired comparisons. However, is there an equivalent to glmTreat() in multiple factor experiments to
use to get D ...