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Comment: Comment: DESeq2 on NanoString Data
12 weeks ago thkapell ▴ 10
0
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1
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
12 weeks ago thkapell ▴ 10
0
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2
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13k
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Answer: Answer: Can NanoString data be analyzed using DESeq2?
3 months ago thkapell ▴ 10
0
votes
1
reply
706
views
NAs in some genes in topTable output
limma topTable
updated 2.8 years ago by 53k • written 2.8 years ago by ▴ 10
0
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1
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773
views
Interpretation of comparison results in nested designs
DESeq2
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 10
0
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1
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1.8k
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Comment: Comment: DE analysis model matrix for paired samples
3.8 years ago thkapell ▴ 10
0
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4
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1.8k
views
DE analysis model matrix for paired samples
NanoStringNCTools DESeq2
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 10
0
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1
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1.5k
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Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 3.9 years ago by • 0 • written 3.9 years ago by ▴ 10
0
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1
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
3.9 years ago thkapell ▴ 10
0
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0
replies
14k
views
Answer: Answer: Cannot install clusterProfiler
4.0 years ago thkapell ▴ 10
0
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0
replies
13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4.0 years ago thkapell ▴ 10
0
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1
reply
13k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
4.0 years ago thkapell ▴ 10
1
vote
1
reply
2.9k
views
Method and kcdf arguments in gsva package
GSVA
updated 5.6 years ago by ★ 3.4k • written 5.6 years ago by ▴ 10
0
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1
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1.0k
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 5.6 years ago by ★ 29k • written 5.6 years ago by ▴ 10
0
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1
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1.6k
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Comment: C: How can doubletCell() scores be converted to single/doublet annotation?
5.7 years ago thkapell ▴ 10
0
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3
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1.6k
views
How can doubletCell() scores be converted to single/doublet annotation?
scran doublet
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ▴ 10
0
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1
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817
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Comment: C: Is DESeq2 normalisation method appropriate for datasets with multiple cell types
6.0 years ago thkapell ▴ 10
1
vote
3
replies
817
views
Is DESeq2 normalisation method appropriate for datasets with multiple cell types?
deseq2 normalization
updated 6.0 years ago by 43k • written 6.0 years ago by ▴ 10
0
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0
replies
2.1k
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Comment: C: Error in sva() function: missing values, NaNs produced
6.0 years ago thkapell ▴ 10
0
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1
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2.1k
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Comment: C: Error in sva() function: missing values, NaNs produced
6.0 years ago thkapell ▴ 10
0
votes
1
reply
2.1k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.0 years ago thkapell ▴ 10
0
votes
1
reply
2.1k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.0 years ago thkapell ▴ 10
0
votes
8
replies
2.1k
views
Error in sva() function: missing values, NaNs produced
sva batch-correction
updated 6.0 years ago by 68k • written 6.0 years ago by ▴ 10
0
votes
5
replies
3.8k
views
Cannot install Bioconductor v3.9
scran cellassign bioconductor
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
0
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0
replies
3.8k
views
Comment: C: Cannot install Bioconductor v3.9
6.1 years ago thkapell ▴ 10
0
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1
reply
2.5k
views
Installation of r2excel package
github packages
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 10
0
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1
reply
2.9k
views
Comment: C: DESeq2: removal of duplicated genes during statistical analysis
7.0 years ago thkapell ▴ 10
0
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3
replies
2.9k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 10
0
votes
0
replies
2.1k
views
Comment: C: GSEA using TFs as the gene set
7.0 years ago thkapell ▴ 10
0
votes
2
replies
2.1k
views
GSEA using TFs as the gene set
GSEA transcription factor binding site enrichment analysis
updated 7.0 years ago by ▴ 50 • written 7.0 years ago by ▴ 10
0
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1
reply
6.8k
views
Comment: C: How are the shrunk result data used in DESeq2?
7.6 years ago thkapell ▴ 10
0
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3
replies
6.8k
views
How are the shrunk result data used in DESeq2?
deseq2 lfcshrink
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 10
0
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0
replies
2.0k
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Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago thkapell ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago thkapell ▴ 10
0
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1
reply
2.0k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago thkapell ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago thkapell ▴ 10
0
votes
1
reply
2.0k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.7 years ago thkapell ▴ 10
2
votes
10
replies
2.0k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR deanalysis test fisher exact
updated 7.7 years ago by ★ 29k • written 7.7 years ago by ▴ 10
0
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0
replies
7.0k
views
Comment: C: how to control age and gender effect in expression data using DESeq2
7.7 years ago thkapell ▴ 10
3
votes
4
replies
1.8k
views
Normalisation in edgeR
edgeR normalization calcnormfactors
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 10
0
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0
replies
3.3k
views
Comment: C: How to plot MD plot in limma
7.7 years ago thkapell ▴ 10
2
votes
4
replies
3.3k
views
How to plot MD plot in limma
limma plotMD
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 10
0
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1
reply
3.3k
views
Comment: A: How to plot MD plot in limma
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 10
0
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0
replies
1.8k
views
Comment: A: Normalisation in edgeR
7.7 years ago thkapell ▴ 10
0
votes
1
reply
794
views
Comment: C: Multiple comparisons in DESeq2
7.7 years ago thkapell ▴ 10
1
vote
3
replies
794
views
Multiple comparisons in DESeq2
deseq2
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 10
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