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356
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NAs in some genes in topTable output
limma topTable
updated 15 months ago by 50k • written 15 months ago by ▴ 10
0
votes
1
reply
498
views
Interpretation of comparison results in nested designs
DESeq2
updated 22 months ago by 41k • written 22 months ago by ▴ 10
0
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1
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1.1k
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Comment: Comment: DE analysis model matrix for paired samples
2.3 years ago thkapell ▴ 10
0
votes
4
replies
1.1k
views
DE analysis model matrix for paired samples
NanoStringNCTools DESeq2
updated 2.3 years ago by 41k • written 2.3 years ago by ▴ 10
0
votes
1
reply
896
views
Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
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1
reply
8.5k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
2.4 years ago thkapell ▴ 10
0
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0
replies
9.2k
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Answer: Answer: Cannot install clusterProfiler
2.4 years ago thkapell ▴ 10
0
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0
replies
8.5k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
2.4 years ago thkapell ▴ 10
0
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1
reply
8.5k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
2.5 years ago thkapell ▴ 10
1
vote
1
reply
1.7k
views
Method and kcdf arguments in gsva package
GSVA
updated 4.0 years ago by ★ 3.3k • written 4.0 years ago by ▴ 10
0
votes
1
reply
545
views
Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.0 years ago by ★ 28k • written 4.0 years ago by ▴ 10
0
votes
1
reply
960
views
Comment: C: How can doubletCell() scores be converted to single/doublet annotation?
4.1 years ago thkapell ▴ 10
0
votes
3
replies
960
views
How can doubletCell() scores be converted to single/doublet annotation?
scran doublet
updated 4.1 years ago by ★ 28k • written 4.1 years ago by ▴ 10
0
votes
1
reply
520
views
Comment: C: Is DESeq2 normalisation method appropriate for datasets with multiple cell types
4.4 years ago thkapell ▴ 10
1
vote
3
replies
520
views
Is DESeq2 normalisation method appropriate for datasets with multiple cell types?
deseq2 normalization
updated 4.4 years ago by 41k • written 4.4 years ago by ▴ 10
0
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0
replies
1.4k
views
Comment: C: Error in sva() function: missing values, NaNs produced
4.5 years ago thkapell ▴ 10
0
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1
reply
1.4k
views
Comment: C: Error in sva() function: missing values, NaNs produced
4.5 years ago thkapell ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: Error in sva() function: missing values, NaNs produced
4.5 years ago thkapell ▴ 10
0
votes
1
reply
1.4k
views
Comment: C: Error in sva() function: missing values, NaNs produced
4.5 years ago thkapell ▴ 10
0
votes
8
replies
1.4k
views
Error in sva() function: missing values, NaNs produced
sva batch-correction
updated 4.5 years ago by 65k • written 4.5 years ago by ▴ 10
0
votes
5
replies
3.2k
views
Cannot install Bioconductor v3.9
scran cellassign bioconductor
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
0
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0
replies
3.2k
views
Comment: C: Cannot install Bioconductor v3.9
4.6 years ago thkapell ▴ 10
0
votes
1
reply
1.9k
views
Installation of r2excel package
github packages
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 10
0
votes
1
reply
1.9k
views
Comment: C: DESeq2: removal of duplicated genes during statistical analysis
5.4 years ago thkapell ▴ 10
0
votes
3
replies
1.9k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Comment: C: GSEA using TFs as the gene set
5.5 years ago thkapell ▴ 10
0
votes
2
replies
1.3k
views
GSEA using TFs as the gene set
GSEA transcription factor binding site enrichment analysis
updated 5.5 years ago by ▴ 50 • written 5.5 years ago by ▴ 10
0
votes
1
reply
5.4k
views
Comment: C: How are the shrunk result data used in DESeq2?
6.1 years ago thkapell ▴ 10
0
votes
3
replies
5.4k
views
How are the shrunk result data used in DESeq2?
deseq2 lfcshrink
updated 6.1 years ago by 41k • written 6.1 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.1 years ago thkapell ▴ 10
0
votes
1
reply
1.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.1 years ago thkapell ▴ 10
0
votes
1
reply
1.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.1 years ago thkapell ▴ 10
0
votes
1
reply
1.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.1 years ago thkapell ▴ 10
0
votes
1
reply
1.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
6.1 years ago thkapell ▴ 10
2
votes
10
replies
1.2k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR deanalysis test fisher exact
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 10
0
votes
0
replies
5.3k
views
Comment: C: how to control age and gender effect in expression data using DESeq2
6.1 years ago thkapell ▴ 10
3
votes
4
replies
1.2k
views
Normalisation in edgeR
edgeR normalization calcnormfactors
updated 6.1 years ago by 50k • written 6.1 years ago by ▴ 10
0
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0
replies
2.6k
views
Comment: C: How to plot MD plot in limma
6.1 years ago thkapell ▴ 10
2
votes
4
replies
2.6k
views
How to plot MD plot in limma
limma plotMD
updated 6.1 years ago by 50k • written 6.1 years ago by ▴ 10
0
votes
1
reply
2.6k
views
Comment: A: How to plot MD plot in limma
updated 6.1 years ago by 50k • written 6.1 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Comment: A: Normalisation in edgeR
6.1 years ago thkapell ▴ 10
0
votes
1
reply
593
views
Comment: C: Multiple comparisons in DESeq2
6.1 years ago thkapell ▴ 10
1
vote
3
replies
593
views
Multiple comparisons in DESeq2
deseq2
updated 6.4 years ago by 41k • written 6.4 years ago by ▴ 10
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