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Comment: Comment: DESeq2 on NanoString Data
4 months ago thkapell ▴ 10
0
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1
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4 months ago thkapell ▴ 10
0
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2
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13k
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Answer: Answer: Can NanoString data be analyzed using DESeq2?
5 months ago thkapell ▴ 10
0
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1
reply
744
views
NAs in some genes in topTable output
limma topTable
updated 3.0 years ago by 53k • written 3.0 years ago by ▴ 10
0
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1
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790
views
Interpretation of comparison results in nested designs
DESeq2
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 10
0
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1
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1.9k
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Comment: Comment: DE analysis model matrix for paired samples
4.0 years ago thkapell ▴ 10
0
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4
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1.9k
views
DE analysis model matrix for paired samples
NanoStringNCTools DESeq2
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 10
0
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1
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1.6k
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Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood
miloR
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 10
0
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1
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13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4.1 years ago thkapell ▴ 10
0
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0
replies
14k
views
Answer: Answer: Cannot install clusterProfiler
4.2 years ago thkapell ▴ 10
0
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0
replies
13k
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Comment: Comment: Can NanoString data be analyzed using DESeq2?
4.2 years ago thkapell ▴ 10
0
votes
1
reply
13k
views
Comment: Comment: Can NanoString data be analyzed using DESeq2?
4.2 years ago thkapell ▴ 10
1
vote
1
reply
3.3k
views
Method and kcdf arguments in gsva package
GSVA
updated 5.7 years ago by ★ 3.4k • written 5.7 years ago by ▴ 10
0
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1
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1.1k
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Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 5.8 years ago by ★ 29k • written 5.8 years ago by ▴ 10
0
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1
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1.7k
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Comment: C: How can doubletCell() scores be converted to single/doublet annotation?
5.8 years ago thkapell ▴ 10
0
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3
replies
1.7k
views
How can doubletCell() scores be converted to single/doublet annotation?
scran doublet
updated 5.8 years ago by ★ 29k • written 5.8 years ago by ▴ 10
0
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1
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864
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Comment: C: Is DESeq2 normalisation method appropriate for datasets with multiple cell types
6.2 years ago thkapell ▴ 10
1
vote
3
replies
864
views
Is DESeq2 normalisation method appropriate for datasets with multiple cell types?
deseq2 normalization
updated 6.2 years ago by 43k • written 6.2 years ago by ▴ 10
0
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0
replies
2.2k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.2 years ago thkapell ▴ 10
0
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1
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2.2k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.2 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.2 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: Error in sva() function: missing values, NaNs produced
6.2 years ago thkapell ▴ 10
0
votes
8
replies
2.2k
views
Error in sva() function: missing values, NaNs produced
sva batch-correction
updated 6.2 years ago by 68k • written 6.2 years ago by ▴ 10
0
votes
5
replies
3.9k
views
Cannot install Bioconductor v3.9
scran cellassign bioconductor
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 10
0
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0
replies
3.9k
views
Comment: C: Cannot install Bioconductor v3.9
6.3 years ago thkapell ▴ 10
0
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1
reply
2.5k
views
Installation of r2excel package
github packages
updated 7.0 years ago by 53k • written 7.0 years ago by ▴ 10
0
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1
reply
3.0k
views
Comment: C: DESeq2: removal of duplicated genes during statistical analysis
7.2 years ago thkapell ▴ 10
0
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3
replies
3.0k
views
DESeq2: removal of duplicated genes during statistical analysis
deseq2 gene symbol ensembl
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 10
0
votes
0
replies
2.2k
views
Comment: C: GSEA using TFs as the gene set
7.2 years ago thkapell ▴ 10
0
votes
2
replies
2.2k
views
GSEA using TFs as the gene set
GSEA transcription factor binding site enrichment analysis
updated 7.2 years ago by ▴ 50 • written 7.2 years ago by ▴ 10
0
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1
reply
7.0k
views
Comment: C: How are the shrunk result data used in DESeq2?
7.8 years ago thkapell ▴ 10
0
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3
replies
7.0k
views
How are the shrunk result data used in DESeq2?
deseq2 lfcshrink
updated 7.8 years ago by 43k • written 7.8 years ago by ▴ 10
0
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0
replies
2.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.9 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.9 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.9 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.9 years ago thkapell ▴ 10
0
votes
1
reply
2.2k
views
Comment: C: How to get DE relative to a fold-change threshold in single factor experiments
7.9 years ago thkapell ▴ 10
2
votes
10
replies
2.2k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR deanalysis test fisher exact
updated 7.9 years ago by ★ 29k • written 7.9 years ago by ▴ 10
0
votes
0
replies
7.3k
views
Comment: C: how to control age and gender effect in expression data using DESeq2
7.9 years ago thkapell ▴ 10
3
votes
4
replies
1.9k
views
Normalisation in edgeR
edgeR normalization calcnormfactors
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 10
0
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0
replies
3.4k
views
Comment: C: How to plot MD plot in limma
7.9 years ago thkapell ▴ 10
2
votes
4
replies
3.4k
views
How to plot MD plot in limma
limma plotMD
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 10
0
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1
reply
3.4k
views
Comment: A: How to plot MD plot in limma
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 10
0
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0
replies
1.9k
views
Comment: A: Normalisation in edgeR
7.9 years ago thkapell ▴ 10
0
votes
1
reply
854
views
Comment: C: Multiple comparisons in DESeq2
7.9 years ago thkapell ▴ 10
1
vote
3
replies
854
views
Multiple comparisons in DESeq2
deseq2
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 10
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