User: ag1805x

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ag1805x0
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Posts by ag1805x

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Comment: C: Ballgown up and down regulated genes
... How many replicated do you have per group? I had similar problem when I had 2 replicates per group; but increasing it to 3 solved the problem.  ...
written 11 weeks ago by ag1805x0
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Comment: C: How fold change is calculated in Ballgown?
... Is any log transformation done on the FPKM values during FC calculation? I tried to manually calculate the FC by extracting the FPKM values for few genes using gexpr(), but the result I obtained differs considerably from the stattest result. Also after stattest the genes that were supposed to be up ...
written 3 months ago by ag1805x0
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Comment: C: How fold change is calculated in Ballgown?
... Is KO & WT the covariate considered during stattest?  ...
written 3 months ago by ag1805x0
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What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
... I am looking for the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest? By using gexpr I got the gene expression values for the list of genes. For better understanding I tried to calculate the FC for a few genes manually but the values I obtained differed f ...
ballgown fold change stattest written 3 months ago by ag1805x0 • updated 3 months ago by James W. MacDonald46k

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