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3
votes
4
replies
8.4k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
written 5.5 years ago by ▴ 80
0
votes
1
reply
1.1k
views
To count or not to count multi-overlapping reads?
RNA-Seq featureCounts Rsubread
updated 11 months ago by 53k • written 11 months ago by ▴ 80
0
votes
1
reply
4.2k
views
Comment: Comment: WGCNA parallelization multi thread for blockwiseModules and TOMsimilarity
15 months ago Arindam ▴ 80
0
votes
0
replies
914
views
Comment: Comment: KEGGgraph result difference
15 months ago Arindam ▴ 80
1
vote
2
replies
914
views
KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
16 months ago • updated 15 months ago Arindam ▴ 80
0
votes
2
replies
5.2k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 5.5 years ago by ▴ 80
0
votes
1
reply
2.7k
views
Gene level methylation values
methylation methylKit bsseq
updated 4.3 years ago by ▴ 10 • written 4.5 years ago by ▴ 80
0
votes
1
reply
4.1k
views
Comment: Comment: Map uniprot entry name to accession number
4.9 years ago Arindam ▴ 80
0
votes
0
replies
3.4k
views
Comment: C: Soft-threshold in WGCNA
5.5 years ago Arindam ▴ 80
0
votes
2
replies
3.4k
views
Soft-threshold in WGCNA
wgcna network bicor threshold
updated 5.5 years ago by ★ 3.0k • written 5.5 years ago by ▴ 80
1
vote
0
replies
18k
views
Comment: C: WGCNA Hub Gene Selection Method
5.8 years ago Arindam ▴ 80
0
votes
0
replies
11k
views
Comment: C: WGCNA export to cytoscape
6.0 years ago Arindam ▴ 80
0
votes
1
reply
25k
views
Comment: C: WGCNA: Understanding module-trait correlations
6.1 years ago Arindam ▴ 80
0
votes
0
replies
2.9k
views
Comment: C: Case-control study using WGCNA
6.1 years ago Arindam ▴ 80
0
votes
1
reply
2.9k
views
Comment: C: Case-control study using WGCNA
6.1 years ago Arindam ▴ 80
2
votes
4
replies
2.9k
views
Case-control study using WGCNA
wgcna network rna-seq
6.1 years ago Arindam ▴ 80
0
votes
0
replies
3.2k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
6.2 years ago Arindam ▴ 80
0
votes
1
reply
3.2k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
6.2 years ago Arindam ▴ 80
1
vote
4
replies
3.2k
views
Removal of batch effects from RNA-seq data for WGCNA
limma deseq2 wgcna RUVseq
6.2 years ago Arindam ▴ 80
0
votes
0
replies
9.6k
views
Comment: C: WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for
6.2 years ago Arindam ▴ 80
0
votes
0
replies
2.2k
views
Comment: C: Difference in PCA variance calculation in DESeq2
6.3 years ago Arindam ▴ 80
0
votes
1
reply
2.2k
views
Comment: C: Difference in PCA variance calculation in DESeq2
6.3 years ago Arindam ▴ 80
1
vote
4
replies
2.2k
views
Difference in PCA variance calculation in DESeq2
deseq2 pca hclust
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 80
2
votes
1
reply
6.3k
views
Comment: C: tximport transcript missing
6.4 years ago Arindam ▴ 80
2
votes
3
replies
1.7k
views
Design for introducing batch effect in DESeq2
deseq2 combat batch effect rna-seq edger
updated 6.4 years ago by ★ 1.4k • written 6.4 years ago by ▴ 80
0
votes
1
reply
1.3k
views
How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
updated 20 months ago by • 0 • written 6.4 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Comment: C: WGCNA from different lengths RNAseq read
6.7 years ago Arindam ▴ 80
4
votes
3
replies
1.5k
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 80
0
votes
0
replies
13k
views
Comment: C: DESeq2 FPKM normalization
7.3 years ago Arindam ▴ 80
0
votes
1
reply
21k
views
Comment: C: log2FoldChange calculation in DESeq2 output
7.5 years ago Arindam ▴ 80
0
votes
1
reply
7.6k
views
Comment: C: "Over-correction" in the size-factors of the DESeq2 package
7.5 years ago Arindam ▴ 80
0
votes
2
replies
3.5k
views
What are the different strategies to filter out low count genes?
rnaseq deseq2 differential gene expression
updated 7.6 years ago by ★ 13k • written 7.6 years ago by ▴ 80
0
votes
0
replies
7.3k
views
Comment: C: Too many (?) differentially expressed genes - edgeR and DESeq
7.6 years ago Arindam ▴ 80
0
votes
2
replies
9.2k
views
Comment: C: DESeq2 vs Ballgown results
7.6 years ago Arindam ▴ 80
0
votes
0
replies
8.1k
views
Comment: C: Ballgown up and down regulated genes
7.9 years ago Arindam ▴ 80
1
vote
1
reply
1.9k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 80
1
vote
0
replies
4.3k
views
Comment: C: How fold change is calculated in Ballgown?
7.9 years ago Arindam ▴ 80
0
votes
0
replies
4.3k
views
Comment: C: How fold change is calculated in Ballgown?
7.9 years ago Arindam ▴ 80
38 results • Page 1 of 1
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