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0
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2
replies
3.4k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq
featureCounts
ht-seq
written 3.7 years ago by
ag1805x
▴ 80
0
votes
1
reply
1.0k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.5 years ago by
alex.gos90
▴ 10 • written 2.7 years ago by
ag1805x
▴ 80
0
votes
1
reply
3.0k
views
Comment:
Comment: Map uniprot entry name to accession number
3.0 years ago
ag1805x
▴ 80
3
votes
2
replies
4.9k
views
Calculation of module membership in WGCNA
WGCNA
RNA-seq
ModuleMembership
Network
Hub gene
updated 22 months ago by
annamariabugaj
▴ 10 • written 3.6 years ago by
ag1805x
▴ 80
0
votes
0
replies
2.0k
views
Comment:
C: Soft-threshold in WGCNA
3.6 years ago
ag1805x
▴ 80
0
votes
2
replies
2.0k
views
Soft-threshold in WGCNA
wgcna
network
bicor
threshold
updated 3.6 years ago by
Peter Langfelder
★ 2.9k • written 3.6 years ago by
ag1805x
▴ 80
1
vote
0
replies
14k
views
Comment:
C: WGCNA Hub Gene Selection Method
4.0 years ago
ag1805x
▴ 80
0
votes
0
replies
8.1k
views
Comment:
C: WGCNA export to cytoscape
4.2 years ago
ag1805x
▴ 80
0
votes
1
reply
14k
views
Comment:
C: WGCNA: Understanding module-trait correlations
4.3 years ago
ag1805x
▴ 80
0
votes
0
replies
1.7k
views
Comment:
C: Case-control study using WGCNA
4.3 years ago
ag1805x
▴ 80
0
votes
1
reply
1.7k
views
Comment:
C: Case-control study using WGCNA
4.3 years ago
ag1805x
▴ 80
2
votes
4
replies
1.7k
views
Case-control study using WGCNA
wgcna
network
rna-seq
4.3 years ago
ag1805x
▴ 80
0
votes
0
replies
2.2k
views
Comment:
C: Removal of batch effects from RNA-seq data for WGCNA
4.4 years ago
ag1805x
▴ 80
0
votes
1
reply
2.2k
views
Comment:
C: Removal of batch effects from RNA-seq data for WGCNA
4.4 years ago
ag1805x
▴ 80
1
vote
4
replies
2.2k
views
Removal of batch effects from RNA-seq data for WGCNA
limma
deseq2
wgcna
RUVseq
4.4 years ago
ag1805x
▴ 80
0
votes
0
replies
5.9k
views
Comment:
C: WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for
4.4 years ago
ag1805x
▴ 80
0
votes
0
replies
1.4k
views
Comment:
C: Difference in PCA variance calculation in DESeq2
4.4 years ago
ag1805x
▴ 80
0
votes
1
reply
1.4k
views
Comment:
C: Difference in PCA variance calculation in DESeq2
4.5 years ago
ag1805x
▴ 80
1
vote
4
replies
1.4k
views
Difference in PCA variance calculation in DESeq2
deseq2
pca
hclust
updated 4.5 years ago by
Michael Love
41k • written 4.5 years ago by
ag1805x
▴ 80
2
votes
1
reply
4.7k
views
Comment:
C: tximport transcript missing
4.5 years ago
ag1805x
▴ 80
2
votes
3
replies
1.0k
views
Design for introducing batch effect in DESeq2
deseq2
combat
batch effect
rna-seq
edger
updated 4.6 years ago by
swbarnes2
★ 1.3k • written 4.6 years ago by
ag1805x
▴ 80
0
votes
0
replies
659
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
4.6 years ago
ag1805x
▴ 80
0
votes
1
reply
883
views
Comment:
C: WGCNA from different lengths RNAseq read
4.9 years ago
ag1805x
▴ 80
4
votes
3
replies
883
views
WGCNA from different lengths RNAseq read
wgcna
network
co-expression
rnaseq
updated 4.9 years ago by
Peter Langfelder
★ 2.9k • written 4.9 years ago by
ag1805x
▴ 80
0
votes
0
replies
12k
views
Comment:
C: DESeq2 FPKM normalization
5.5 years ago
ag1805x
▴ 80
0
votes
1
reply
19k
views
Comment:
C: log2FoldChange calculation in DESeq2 output
5.7 years ago
ag1805x
▴ 80
0
votes
1
reply
6.0k
views
Comment:
C: "Over-correction" in the size-factors of the DESeq2 package
5.7 years ago
ag1805x
▴ 80
0
votes
2
replies
2.1k
views
What are the different strategies to filter out low count genes?
rnaseq
deseq2
differential gene expression
updated 5.7 years ago by
Wolfgang Huber
★ 13k • written 5.7 years ago by
ag1805x
▴ 80
0
votes
0
replies
6.2k
views
Comment:
C: Too many (?) differentially expressed genes - edgeR and DESeq
5.7 years ago
ag1805x
▴ 80
0
votes
2
replies
7.3k
views
Comment:
C: DESeq2 vs Ballgown results
5.7 years ago
ag1805x
▴ 80
0
votes
0
replies
6.5k
views
Comment:
C: Ballgown up and down regulated genes
6.0 years ago
ag1805x
▴ 80
1
vote
1
reply
1.3k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.0 years ago by
James W. MacDonald
65k • written 6.1 years ago by
ag1805x
▴ 80
1
vote
0
replies
3.4k
views
Comment:
C: How fold change is calculated in Ballgown?
6.1 years ago
ag1805x
▴ 80
0
votes
0
replies
3.4k
views
Comment:
C: How fold change is calculated in Ballgown?
6.1 years ago
ag1805x
▴ 80
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