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492
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Gene level methylation values
methylation methylKit bsseq
updated 17 months ago by ▴ 10 • written 20 months ago by ▴ 80
0
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1
reply
2.5k
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Comment: Comment: Map uniprot entry name to accession number
2.0 years ago ag1805x ▴ 80
3
votes
2
replies
2.9k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 10 months ago by ▴ 10 • written 2.6 years ago by ▴ 80
0
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0
replies
1.1k
views
Comment: C: Soft-threshold in WGCNA
2.6 years ago ag1805x ▴ 80
0
votes
2
replies
1.1k
views
Soft-threshold in WGCNA
wgcna network bicor threshold
updated 2.6 years ago by ★ 2.7k • written 2.6 years ago by ▴ 80
0
votes
1
reply
2.3k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
updated 2.7 years ago by ★ 1.2k • written 2.7 years ago by ▴ 80
1
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0
replies
12k
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Comment: C: WGCNA Hub Gene Selection Method
3.0 years ago ag1805x ▴ 80
0
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0
replies
6.6k
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Comment: C: WGCNA export to cytoscape
3.2 years ago ag1805x ▴ 80
0
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1
reply
9.0k
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Comment: C: WGCNA: Understanding module-trait correlations
3.3 years ago ag1805x ▴ 80
0
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0
replies
1.0k
views
Comment: C: Case-control study using WGCNA
3.3 years ago ag1805x ▴ 80
0
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1
reply
1.0k
views
Comment: C: Case-control study using WGCNA
3.3 years ago ag1805x ▴ 80
2
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4
replies
1.0k
views
Case-control study using WGCNA
wgcna network rna-seq
3.3 years ago ag1805x ▴ 80
0
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0
replies
1.4k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
3.4 years ago ag1805x ▴ 80
0
votes
1
reply
1.4k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
3.4 years ago ag1805x ▴ 80
1
vote
4
replies
1.4k
views
Removal of batch effects from RNA-seq data for WGCNA
limma deseq2 wgcna RUVseq
3.4 years ago ag1805x ▴ 80
0
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0
replies
4.0k
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Comment: C: WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for
3.4 years ago ag1805x ▴ 80
0
votes
0
replies
777
views
Comment: C: Difference in PCA variance calculation in DESeq2
3.5 years ago ag1805x ▴ 80
0
votes
1
reply
777
views
Comment: C: Difference in PCA variance calculation in DESeq2
3.5 years ago ag1805x ▴ 80
1
vote
4
replies
777
views
Difference in PCA variance calculation in DESeq2
deseq2 pca hclust
updated 3.5 years ago by 39k • written 3.5 years ago by ▴ 80
2
votes
1
reply
3.6k
views
Comment: C: tximport transcript missing
3.5 years ago ag1805x ▴ 80
2
votes
3
replies
630
views
Design for introducing batch effect in DESeq2
deseq2 combat batch effect rna-seq edger
updated 3.6 years ago by ★ 1.2k • written 3.6 years ago by ▴ 80
0
votes
0
replies
409
views
How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
3.6 years ago ag1805x ▴ 80
0
votes
1
reply
546
views
Comment: C: WGCNA from different lengths RNAseq read
3.9 years ago ag1805x ▴ 80
2
votes
3
replies
546
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 3.9 years ago by ★ 2.7k • written 3.9 years ago by ▴ 80
0
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0
replies
12k
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Comment: C: DESeq2 FPKM normalization
4.5 years ago ag1805x ▴ 80
0
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1
reply
17k
views
Comment: C: log2FoldChange calculation in DESeq2 output
4.7 years ago ag1805x ▴ 80
0
votes
1
reply
5.1k
views
Comment: C: "Over-correction" in the size-factors of the DESeq2 package
4.7 years ago ag1805x ▴ 80
0
votes
2
replies
1.2k
views
What are the different strategies to filter out low count genes?
rnaseq deseq2 differential gene expression
updated 4.7 years ago by 13k • written 4.7 years ago by ▴ 80
0
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0
replies
5.5k
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Comment: C: Too many (?) differentially expressed genes - edgeR and DESeq
4.7 years ago ag1805x ▴ 80
0
votes
2
replies
6.1k
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Comment: C: DESeq2 vs Ballgown results
4.7 years ago ag1805x ▴ 80
0
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0
replies
5.6k
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Comment: C: Ballgown up and down regulated genes
5.0 years ago ag1805x ▴ 80
1
vote
1
reply
940
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 5.1 years ago by 62k • written 5.1 years ago by ▴ 80
1
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0
replies
2.8k
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Comment: C: How fold change is calculated in Ballgown?
5.1 years ago ag1805x ▴ 80
0
votes
0
replies
2.8k
views
Comment: C: How fold change is calculated in Ballgown?
5.1 years ago ag1805x ▴ 80
34 results • Page 1 of 1
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