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Posts by twtoal
... When using both a normal and tumor matched pair, why isn't there an option to PureCN to tell it the ID of the normal sample in the VCF, as there is the --sampleid option to give it the tumor ID? ...
... Here are several questions about PureCN germline SNPs, all interrelated. Should a germline caller be used to obtain germline SNP information for use with PureCN? If so, wouldn't it make sense to provide this VCF file as one of the inputs to PureCN? How is a germline SNP defined for PureCN purpose ...
... When I search the user guide and reference manual for "indel", I don't find it in either one. I presume this means I can use both SNPs and indels with PureCN? ...
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