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0
votes
1
reply
1.6k
views
Comment:
Comment: PureCN C (integer segment copy number) in curated samples
2.9 years ago
twtoal
▴ 10
0
votes
1
reply
1.6k
views
Comment:
Comment: PureCN C (integer segment copy number) in curated samples
2.9 years ago
twtoal
▴ 10
1
vote
5
replies
1.6k
views
PureCN C (integer segment copy number) in curated samples
PureC
PureCN
updated 2.9 years ago by
markus.riester
▴ 130 • written 2.9 years ago by
twtoal
▴ 10
0
votes
2
replies
1.2k
views
PureCN COSMIC VCF via PureCN.R - is there an option?
PureCN
COSMIC
updated 3.1 years ago by
markus.riester
▴ 130 • written 3.1 years ago by
twtoal
▴ 10
0
votes
1
reply
854
views
PureCN performance of somatic/germline status prediction without matched normal?
SomaticMutation
GermlineMutation
PureCN
updated 3.1 years ago by
markus.riester
▴ 130 • written 3.1 years ago by
twtoal
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: Corrupt data in Sex column of .csv file
3.4 years ago
twtoal
▴ 10
0
votes
3
replies
1.0k
views
Corrupt data in Sex column of .csv file
PureCN
3.4 years ago
twtoal
▴ 10
0
votes
0
replies
1.0k
views
Comment:
Comment: Corrupt data in Sex column of .csv file
3.4 years ago
twtoal
▴ 10
0
votes
0
replies
1.4k
views
Comment:
C: PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
4.3 years ago
twtoal
▴ 10
0
votes
2
replies
1.4k
views
PureCN/ASCAT comparison and purity/ploidy of multi-regional sequencing data
PureCN
ASCAT
purity
ploidy
multi-regional sequencing
4.3 years ago
twtoal
▴ 10
0
votes
1
reply
1.3k
views
Comment:
C: PureCN gene LOH very common, amp/del not
4.4 years ago
twtoal
▴ 10
0
votes
3
replies
1.3k
views
PureCN gene LOH very common, amp/del not
PureCN
gene
amplification
deletion
loh
updated 4.4 years ago by
markus.riester
▴ 130 • written 4.4 years ago by
twtoal
▴ 10
0
votes
0
replies
1.1k
views
Comment:
C: Why is PureCN LOH file missing some segments
4.6 years ago
twtoal
▴ 10
0
votes
1
reply
1.1k
views
Comment:
C: Why is PureCN LOH file missing some segments
4.6 years ago
twtoal
▴ 10
0
votes
4
replies
1.1k
views
Why is PureCN LOH file missing some segments
purecn
loh
4.6 years ago
twtoal
▴ 10
0
votes
0
replies
283
views
PureCN Raw Coverage Available?
PureCN coverage raw_coverage
4.6 years ago
twtoal
▴ 10
0
votes
2
replies
1.3k
views
PureCN version clashes at GitHub and Bioconductor
version
PureCN
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
twtoal
▴ 10
0
votes
0
replies
1.1k
views
Comment:
C: callLOH output file NA values
5.4 years ago
twtoal
▴ 10
0
votes
1
reply
1.1k
views
Comment:
C: callLOH output file NA values
5.4 years ago
twtoal
▴ 10
0
votes
3
replies
1.1k
views
callLOH output file NA values
PureCN
NA values
updated 5.4 years ago by
markus.riester
▴ 130 • written 5.4 years ago by
twtoal
▴ 10
0
votes
1
reply
1.2k
views
PureCN.R warning "duplicate keys in header will be forced to unique rownames"
PureCN
updated 5.4 years ago by
markus.riester
▴ 130 • written 5.4 years ago by
twtoal
▴ 10
0
votes
1
reply
992
views
Chromosome arm loss and --maxhomozygousloss default
Purecn
maxhomozygousloss
5.9 years ago
twtoal
▴ 10
0
votes
1
reply
1.0k
views
Copy ratio close to but not exactly 1
PureCN
CopyRatio
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
twtoal
▴ 10
0
votes
1
reply
1.3k
views
Comment:
C: Assigning DUP/DEL p-value to CNV segment
6.0 years ago
twtoal
▴ 10
0
votes
3
replies
1.3k
views
Assigning DUP/DEL p-value to CNV segment
PureCN
6.0 years ago
twtoal
▴ 10
0
votes
1
reply
1.2k
views
Copy ratio threshold for calling actual CNV
PureCN
copy-ratio
threshold
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
twtoal
▴ 10
0
votes
2
replies
1.0k
views
Mutation Burden file and manual curation
purecn
mutation_burden
manual_curation
6.0 years ago
twtoal
▴ 10
0
votes
0
replies
1.0k
views
Answer:
A: Mutation Burden file and manual curation
6.0 years ago
twtoal
▴ 10
0
votes
1
reply
1.2k
views
PureCN Solution Heatmap values
PureCN
heatmap
likelihoods
6.0 years ago
twtoal
▴ 10
0
votes
0
replies
1.3k
views
Comment:
C: CNV in Normal Samples?
6.0 years ago
twtoal
▴ 10
0
votes
2
replies
1.3k
views
CNV in Normal Samples?
PureCN
Germline
Normal
CNV
updated 6.0 years ago by
markus.riester
▴ 130 • written 6.0 years ago by
twtoal
▴ 10
1
vote
1
reply
988
views
PureCN recover optimum solution
PureCN
Optimum_solution
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
0
votes
1
reply
877
views
PureCN PureCN.R --rds option recreate all output files?
PureCN
--rds
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
0
votes
1
reply
1.2k
views
Comment:
C: PureCN Manual Curation .rds file
6.1 years ago
twtoal
▴ 10
1
vote
3
replies
1.2k
views
PureCN Manual Curation .rds file
PureCN
rds_file
manual_curation
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
0
votes
0
replies
2.0k
views
Comment:
C: Is mean adjusted for purity?
6.1 years ago
twtoal
▴ 10
0
votes
0
replies
1.6k
views
Comment:
C: PureCN optimum solution vs heat map
6.1 years ago
twtoal
▴ 10
0
votes
1
reply
2.0k
views
Comment:
C: Is mean adjusted for purity?
6.4 years ago • updated 6.1 years ago
twtoal
▴ 10
0
votes
2
replies
1.6k
views
Comment:
C: PureCN optimum solution vs heat map
6.1 years ago
twtoal
▴ 10
0
votes
4
replies
1.6k
views
PureCN optimum solution vs heat map
PureCN
Solution
Heatmap
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
twtoal
▴ 10
0
votes
1
reply
2.0k
views
Comment:
C: Is mean adjusted for purity?
6.4 years ago • updated 6.1 years ago
twtoal
▴ 10
0
votes
0
replies
2.0k
views
Answer:
A: PureCN: Error in plot.window(...) : need finite 'ylim' values
6.2 years ago
twtoal
▴ 10
0
votes
3
replies
2.0k
views
PureCN: Error in plot.window(...) : need finite 'ylim' values
PureCN
6.3 years ago • updated 6.2 years ago
twtoal
▴ 10
0
votes
1
reply
2.0k
views
Comment:
C: PureCN: Error in plot.window(...) : need finite 'ylim' values
6.3 years ago
twtoal
▴ 10
0
votes
1
reply
1.3k
views
PureCN Error in xg[1, ] : incorrect number of dimensions
PureCN
6.3 years ago
twtoal
▴ 10
0
votes
1
reply
2.0k
views
Comment:
C: Unable to find solution: low coverage
6.4 years ago
twtoal
▴ 10
0
votes
5
replies
2.0k
views
Is mean adjusted for purity?
PureCN
mean ratio
updated 6.4 years ago by
markus.riester
▴ 130 • written 6.4 years ago by
twtoal
▴ 10
0
votes
2
replies
2.0k
views
Comment:
C: Unable to find solution: low coverage
6.4 years ago
twtoal
▴ 10
3
votes
5
replies
1.8k
views
Understanding PureCN and its germline SNPs
PureCN
germline
SNP
updated 6.4 years ago by
kakbrus
• 0 • written 6.5 years ago by
twtoal
▴ 10
0
votes
2
replies
2.0k
views
Comment:
C: Unable to find solution: low coverage
6.4 years ago
twtoal
▴ 10
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