User: atakanekiz

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atakanekiz10
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Posts by atakanekiz

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Differences between RTCGA and TCGAbiolinks data
... Alright, I think I figured out what's going on. The biggest difference in the results was caused by a missed point during pre-processing. Please see below: RTCGA features an already preprocessed data frame with clinical parameters. In this data frame there is a times variable that combines both d ...
written 5 days ago by atakanekiz10
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Comment: C: Differences between RTCGA and TCGAbiolinks data
... Hi Levi, Thank you very much for your response! This package looks pretty exciting and I see that you are one of the authors. I'm looking forward to trying this. Can you please let me know a bit about the data hosted within the package? Is it pulling out the most recent harmonized data from Firehos ...
written 6 days ago by atakanekiz10
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Differences between RTCGA and TCGAbiolinks data
... Hello Bioconductor community, I'm trying to analyze miRNASeq data of TCGA melanoma (SKCM) samples. This is a prototype analysis in which I picked hsa-mir-155 and looked at how its expression is correlated with survival. My end goal is expanding this analysis to other cancer types also focusing on o ...
R tcgabiolinks mirna-seq rtcga survival analysis written 6 days ago by atakanekiz10
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Microarray differential expression analysis with R involving >200 samples
... Dear BC community, As you might already know immgen is a public database that hosts microarray data from various immune cell populations. There are more than 200 cell types in there (with raw data coming from 2-3 biological replicates that are accessible in this and this links). I'd like crunch al ...
immgen written 27 days ago by atakanekiz10 • updated 27 days ago by Gordon Smyth33k

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