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RNAseq/miRNAseq normalization for calculating gene correlations, survival analysis, and exploratory graphing
limma edger voom rnaseq mirnaseq
4.6 years ago atakanekiz ▴ 30
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Answer: A: Question about using sorted cell bulk microarray data (ImmGen) as reference
4.8 years ago atakanekiz ▴ 30
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3
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1.0k
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Question about using sorted cell bulk microarray data (ImmGen) as reference
scmap
4.8 years ago atakanekiz ▴ 30
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1.0k
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Comment: C: Question about using sorted cell bulk microarray data (ImmGen) as reference
4.8 years ago atakanekiz ▴ 30
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1
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3.7k
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Comment: C: Understanding voom behavior when model matrix is used with/without intercept for
4.8 years ago atakanekiz ▴ 30
3
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6
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3.7k
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Understanding voom behavior when model matrix is used with/without intercept for a continuous variable
limma voom rnaseq model.matrix intercept
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 30
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3.7k
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Comment: C: Understanding voom behavior when model matrix is used with/without intercept for
4.8 years ago atakanekiz ▴ 30
0
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1
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3.3k
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Comment: C: BioMart does not find mouse homologs of human genes
5.0 years ago atakanekiz ▴ 30
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1
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3.3k
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Comment: C: BioMart does not find mouse homologs of human genes
5.0 years ago atakanekiz ▴ 30
0
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3.3k
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Comment: C: BioMart does not find mouse homologs of human genes
5.0 years ago atakanekiz ▴ 30
0
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7
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3.3k
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BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 5.0 years ago by 67k • written 5.0 years ago by ▴ 30
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0
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2.0k
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Comment: C: Unexpected results while analyzing a subset of genes in GEO RNAseq dataset conta
5.0 years ago atakanekiz ▴ 30
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1
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2.0k
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Comment: C: Unexpected results while analyzing a subset of genes in GEO RNAseq dataset conta
5.0 years ago atakanekiz ▴ 30
0
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0
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2.0k
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Comment: C: Unexpected results while analyzing a subset of genes in GEO RNAseq dataset conta
5.0 years ago atakanekiz ▴ 30
0
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1
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2.0k
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Comment: C: Unexpected results while analyzing a subset of genes in GEO RNAseq dataset conta
5.0 years ago atakanekiz ▴ 30
5
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8
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2.0k
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Unexpected results while analyzing a subset of genes in GEO RNAseq dataset containing TPM values
R limma TPM rnaseq differential expression
updated 5.0 years ago by ★ 13k • written 5.0 years ago by ▴ 30
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4.6k
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Comment: C: Understanding clusterprofiler enrichment results
6.2 years ago atakanekiz ▴ 30
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0
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3.3k
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Comment: C: fgsea p-values are mostly the same upon analysis
6.2 years ago atakanekiz ▴ 30
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2
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4.6k
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Understanding clusterprofiler enrichment results
clusterprofiler gene set enrichment analysis enricher sc-rnaseq
updated 6.2 years ago by ★ 1.2k • written 6.2 years ago by ▴ 30
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3.3k
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Comment: A: fgsea p-values are mostly the same upon analysis
6.2 years ago atakanekiz ▴ 30
0
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3
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3.3k
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fgsea p-values are mostly the same upon analysis
fgsea gsea sc-rnaseq
6.2 years ago atakanekiz ▴ 30
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0
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1.9k
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Answer: A: pre-ranked GSEA within R: options?
6.2 years ago atakanekiz ▴ 30
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1.3k
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Comment: C: GAGE analysis with the whole or a subset of matrix
6.2 years ago atakanekiz ▴ 30
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2
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1.3k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
6.2 years ago atakanekiz ▴ 30
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0
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1.3k
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Answer: A: GAGE analysis with the whole or a subset of matrix
6.2 years ago atakanekiz ▴ 30
2
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2.8k
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Answer: A: Differences between RTCGA and TCGAbiolinks data
6.3 years ago atakanekiz ▴ 30
6
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7
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2.8k
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Differences between RTCGA and TCGAbiolinks data
r survival analysis rtcga tcgabiolinks mirna-seq
6.3 years ago atakanekiz ▴ 30
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1
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2.8k
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Comment: C: Differences between RTCGA and TCGAbiolinks data
6.3 years ago atakanekiz ▴ 30
1
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1
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644
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Microarray differential expression analysis with R involving >200 samples
immgen
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 30
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