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2
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0
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1.2k
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Comment: Comment: fgsea stuck in an infinite loop in the middle of the run
13 months ago Assa Yeroslaviz ★ 1.5k
2
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2
replies
1.2k
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fgsea stuck in an infinite loop in the middle of the run
GSEABase fgsea msigdb GeneSetEnrichment
13 months ago Assa Yeroslaviz ★ 1.5k
1
vote
2
replies
3.1k
views
trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 23 months ago by ★ 5.0k • written 23 months ago by ★ 1.5k
1
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1
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3.1k
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Answer: Answer: trying to add SingleR label to Seurat Object fails
23 months ago Assa Yeroslaviz ★ 1.5k
0
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0
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4.4k
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Comment: Comment: How to use "p-value" instead of "p-adj value" in DESeq2
2.0 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
replies
11k
views
scran ScoreMarkers throws a warning
scoreMarkers scran
updated 2.3 years ago by ▴ 760 • written 2.3 years ago by ★ 1.5k
0
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0
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1.6k
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Comment: Comment: Scaling and normalization by deconvolution of SMART-Seq 2 data
2.6 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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1.6k
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Scaling and normalization by deconvolution of SMART-Seq 2 data
scran Clustering SingleCell Normalization
2.6 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.6k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
2.6 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.6k
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Comment: Comment: Can I run DESeq2 with SMART-Seq data
2.6 years ago Assa Yeroslaviz ★ 1.5k
4
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4
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1.6k
views
Can I run DESeq2 with SMART-Seq data
DESeq2 SMART-seq
2.6 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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1.7k
views
Comment: Comment: different number of DEG because of outliers
2.6 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.0k
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Answer: Answer: output file conversion from FeatureCount to DESeq2 - no duplicate for samples
3.1 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
22k
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Comment: Comment: DESeq2: add annotations (from data frame) to DESeqDataSet
3.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.2k
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Comment: Comment: Differential Splicing using edgeR
3.7 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.2k
views
Comment: Comment: Differential Splicing using edgeR
3.7 years ago Assa Yeroslaviz ★ 1.5k
1
vote
4
replies
2.2k
views
Differential Splicing using edgeR
diffSpliceDGE edgeR DifferentialSplicing
3.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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3.1k
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Comment: Comment: How to use subjunc for differential splicing analysis?
3.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
3.1k
views
Comment: Comment: How to use subjunc for differential splicing analysis?
3.8 years ago Assa Yeroslaviz ★ 1.5k
0
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2
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3.1k
views
Comment: Comment: How to use subjunc for differential splicing analysis?
3.8 years ago Assa Yeroslaviz ★ 1.5k
3
votes
6
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3.1k
views
How to use subjunc for differential splicing analysis?
subjunc edgeR
3.8 years ago • updated 3.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
1.3k
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Comment: Comment: catchKallisto results are not counts
3.8 years ago Assa Yeroslaviz ★ 1.5k
2
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2
replies
1.3k
views
catchKallisto results are not counts
DifferentialSplicingWorkflow catchKallisto edgeR DifferentialSplicing
3.8 years ago Assa Yeroslaviz ★ 1.5k
1
vote
2
replies
1.3k
views
How to apply a function to a RleViesList object?
Views IRanges GRanges RleList
updated 4.0 years ago by ★ 6.6k • written 4.0 years ago by ★ 1.5k
1
vote
0
replies
3.1k
views
Comment: Comment: Complex Heatmap shows just one color
4.5 years ago Assa Yeroslaviz ★ 1.5k
3
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2
replies
3.1k
views
Complex Heatmap shows just one color
Heatmap ComplexHeatmap colorRamp
4.5 years ago Assa Yeroslaviz ★ 1.5k
7
votes
8
replies
9.0k
views
Warning in EnhancedVolcano plot
volcano-plot EnhancedVolcano
updated 4.4 years ago by ★ 4.0k • written 4.5 years ago by ★ 1.5k
0
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2
replies
2.1k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 2.7 years ago by • 0 • written 7.6 years ago by ★ 1.5k
2
votes
3
replies
2.9k
views
lfcshrink() with no coef in resultsNames()
lfcshrink coef DESeq2
updated 4.0 years ago by 43k • written 4.9 years ago by ★ 1.5k
0
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0
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1.0k
views
contradicting behavior after in low-dimensional representation with zinbwave
zinbwave PCA
5.0 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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2.9k
views
Comment: C: How to work with duplicates calculating the differentially expressed genes in Ps
5.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
4
replies
2.9k
views
How to work with duplicates calculating the differentially expressed genes in PseudoBulk-singleCell RNA experiment using zinbwave?
scRNA zinbwave batch IntegratedData
updated 5.1 years ago by ▴ 980 • written 5.1 years ago by ★ 1.5k
0
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1
reply
2.9k
views
Comment: C: How to work with duplicates?
5.1 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
2.9k
views
Comment: C: How to work with duplicates?
5.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
12k
views
Comment: C: Plot PCA with ellipses
5.5 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.1k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
5.5 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
1.2k
views
plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
5.6 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
28k
views
lfcShrink doesn't work with contrasts
lfcShrink contrast design deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ★ 1.5k
1
vote
3
replies
1.1k
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 5.8 years ago by 43k • written 5.8 years ago by ★ 1.5k
2
votes
1
reply
1.8k
views
combining columns for experimental design in DESeq2
deseq2 design metadata
updated 5.8 years ago by ▴ 60 • written 5.8 years ago by ★ 1.5k
0
votes
3
replies
1.6k
views
How to apply a linear mixed model onto an RNA-Seq data?
limma linear mixed model voom rna-seq
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
5.4k
views
Answer: A: Plot ggplot2 and ggbio Images Together
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
1.6k
views
Comment: C: BioMart webservices broken?
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
2.2k
views
Comment: C: Plot genes with similar expression patterns
6.4 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
3.9k
views
Comment: C: Time-series analysis with DESeq2
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
3.9k
views
Comment: C: Time-series analysis with DESeq2
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
3.9k
views
Comment: C: Time-series analysis with DESeq2
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
3.9k
views
Comment: C: Time-series analysis with DESeq2
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
3.9k
views
Comment: C: Time-series analysis with DESeq2
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: C: clarification of time-series analysis
6.7 years ago Assa Yeroslaviz ★ 1.5k
329 results • Page 1 of 7
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