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Comment: Comment: DESeq2 output used for PCA plot on R studio
16 months ago Kevin Blighe ★ 4.0k
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Answer: Answer: Difference between vst() and varianceStabilizingTransform()
21 months ago Kevin Blighe ★ 4.0k
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2.2k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
21 months ago Kevin Blighe ★ 4.0k
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1
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3.6k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
updated 19 months ago by 4.2k • written 21 months ago by ★ 4.0k
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1
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3.6k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
21 months ago Kevin Blighe ★ 4.0k
0
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2
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3.6k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
21 months ago Kevin Blighe ★ 4.0k
0
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1
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3.6k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
21 months ago Kevin Blighe ★ 4.0k
0
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1
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2.2k
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Comment: Comment: Ensembl down???
21 months ago Kevin Blighe ★ 4.0k
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0
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3.4k
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Comment: Comment: tximport error: vroom
23 months ago Kevin Blighe ★ 4.0k
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0
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3.1k
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Comment: Comment: PCA percent variance DESeq2
2.1 years ago Kevin Blighe ★ 4.0k
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0
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586
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Answer: Answer: DEG by deseq2 by Race
2.1 years ago Kevin Blighe ★ 4.0k
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1.1k
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Comment: Comment: affy package and SNP arrays
2.2 years ago Kevin Blighe ★ 4.0k
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1
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2.1k
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Answer: Answer: enhanced volcano , different -log10pvalue of the same gene
2.3 years ago Kevin Blighe ★ 4.0k
0
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0
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3.5k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.4 years ago Kevin Blighe ★ 4.0k
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1
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3.5k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.4 years ago Kevin Blighe ★ 4.0k
1
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1
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3.5k
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Answer: Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.4 years ago Kevin Blighe ★ 4.0k
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0
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1.1k
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Comment: Comment: How to import dataset from other software into DESeq2?
2.4 years ago Kevin Blighe ★ 4.0k
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0
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6.1k
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Comment: Comment: How to change the dot size in plotPCA?
2.5 years ago Kevin Blighe ★ 4.0k
0
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0
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889
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Comment: Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
2.5 years ago Kevin Blighe ★ 4.0k
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0
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888
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Answer: Answer: BioC packages in cancer genomics
2.5 years ago Kevin Blighe ★ 4.0k
2
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2.4k
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Answer: Answer: Overlay points with EnhancedVolcano R
2.5 years ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Answer: Answer: Only display positive FC on volcano plot
2.5 years ago Kevin Blighe ★ 4.0k
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0
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3.4k
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Comment: Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
2.6 years ago Kevin Blighe ★ 4.0k
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9.3k
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Comment: Comment: gene ID conversion
2.6 years ago Kevin Blighe ★ 4.0k
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0
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1.9k
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Comment: Comment: Adding ellipse in PCAtools biplot
2.7 years ago Kevin Blighe ★ 4.0k
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1
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1.9k
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Answer: Answer: Adding ellipse in PCAtools biplot
2.7 years ago Kevin Blighe ★ 4.0k
1
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0
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1.9k
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Answer: Answer: PCA input data from DRAGEN RNA pipeline
2.8 years ago Kevin Blighe ★ 4.0k
0
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0
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799
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Answer: Answer: PCA plot, plus sign?
2.8 years ago Kevin Blighe ★ 4.0k
0
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1
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1.5k
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Answer: Answer: Is it possible for the legend labels to be different from the Colcustom names?
2.9 years ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Comment: Comment: RNA-Seq Reads Count
2.9 years ago Kevin Blighe ★ 4.0k
1
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0
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1.2k
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Answer: Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
2.9 years ago Kevin Blighe ★ 4.0k
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1
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1.1k
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Answer: Answer: Second covariate
2.9 years ago Kevin Blighe ★ 4.0k
0
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0
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1.6k
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Comment: Comment: Unable to over/ride colour scheme with custom key-value pairs
2.9 years ago Kevin Blighe ★ 4.0k
0
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0
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2.2k
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Comment: Comment: Biostrings multiple pattern match
2.9 years ago Kevin Blighe ★ 4.0k
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0
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3.2k
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Answer: Answer: Enhanced Volcano Error when drawing connectors
2.9 years ago Kevin Blighe ★ 4.0k
0
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1
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1.6k
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Answer: Answer: color scale ggcyto::autoplot
3.0 years ago Kevin Blighe ★ 4.0k
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0
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4.0k
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Comment: Comment: biomaRt finding transcript lenghts
3.0 years ago Kevin Blighe ★ 4.0k
0
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0
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947
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Comment: Comment: Interpret MetaVolcanoR plot
3.1 years ago Kevin Blighe ★ 4.0k
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0
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2.1k
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Comment: Comment: StringTie output as Ballgown input
3.2 years ago Kevin Blighe ★ 4.0k
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0
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1.7k
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Comment: Comment: I need cancer databases suggestion
3.2 years ago Kevin Blighe ★ 4.0k
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0
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4.1k
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Comment: Comment: KEGG Pathway in R
3.3 years ago Kevin Blighe ★ 4.0k
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0
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2.0k
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Comment: Comment: Italicise
3.3 years ago Kevin Blighe ★ 4.0k
0
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1
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2.0k
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Comment: Comment: Italicise
3.3 years ago Kevin Blighe ★ 4.0k
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1
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2.0k
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Comment: Comment: Italicise
3.3 years ago Kevin Blighe ★ 4.0k
0
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0
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1.2k
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Comment: Comment: R: problem with running time-series analysis software: Mfuzz
3.3 years ago Kevin Blighe ★ 4.0k
1
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0
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4.4k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
3.3 years ago Kevin Blighe ★ 4.0k
1
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1
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4.4k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
3.3 years ago Kevin Blighe ★ 4.0k
1
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1
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4.4k
views
Answer: Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
3.3 years ago Kevin Blighe ★ 4.0k
0
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0
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2.6k
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Comment: Comment: Handling NA values in limma's voom design matrix
3.3 years ago Kevin Blighe ★ 4.0k
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0
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1.2k
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Comment: Comment: different sample size from each individual
3.3 years ago Kevin Blighe ★ 4.0k
889 results • Page 1 of 18
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