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195
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Answer:
Answer: ATACseq rudimentary questions
26 days ago
Kevin Blighe
★ 4.0k
0
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2
replies
2.0k
views
Answer:
Answer: How can I correctly use phyloseq with Docker?
9 weeks ago
Kevin Blighe
★ 4.0k
0
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0
replies
525
views
Answer:
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
462
views
Answer:
Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
475
views
Answer:
Answer: ORFik: spliced 5utr regions
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
434
views
Answer:
Answer: Results with PON give more variants
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
418
views
Answer:
Answer: Empty boxes in treemap plot rrvgo package
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
344
views
Answer:
Answer: CRISPRSeek Question: changing weight and gRNA.size causes error
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
609
views
Answer:
Answer: Feedback needed on new user-friendly BED file tool
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
326
views
Answer:
Answer: sigDF object in sesame
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
447
views
Answer:
Answer: Create consensusMatrix for codon bases
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
510
views
Answer:
Answer: Memory error while running alignments
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.2k
views
Answer:
Answer: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
352
views
Answer:
Answer: Finding duplicated entries in GRangesList
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
371
views
Answer:
Answer: DESeq2 on non-RNASeq counts data
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
533
views
Answer:
Answer: After running samtools, the featureCounts command crashed.
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
652
views
Answer:
Answer: Problem with the TMB plot
9 weeks ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
1.0k
views
Answer:
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
9 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
405
views
Answer:
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
10 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
319
views
Answer:
Answer: Questions about pseudo counts from RUVSeq
10 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
185
views
Comment:
Comment: APAlyzer
10 weeks ago
Kevin Blighe
★ 4.0k
1
vote
0
replies
665
views
Answer:
Answer: gene Set with high AUC score but no cells assigned to cell type
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
374
views
Answer:
Answer: featureCounts -L: high unassigned:mapq fraction
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
493
views
Answer:
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
485
views
Answer:
Answer: incomplete imputation of missing values with LEA impute() function
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
850
views
Answer:
Answer: A problem occurs when running the monocle2
11 weeks ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
626
views
Answer:
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
201
views
Answer:
Answer: VariantAnnotation not does escape = within header string quotes
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
323
views
Answer:
Answer: Setting up a DESeq2 Design with Paired Data
11 weeks ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.9k
views
Comment:
Comment: DESeq2 output used for PCA plot on R studio
21 months ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
2.4k
views
Answer:
Answer: Difference between vst() and varianceStabilizingTransform()
2.1 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.8k
views
Comment:
Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
2.1 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
4.0k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
updated 2.0 years ago by
shepherl
4.3k • written 2.2 years ago by
Kevin Blighe
★ 4.0k
0
votes
1
reply
4.0k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
2.2 years ago
Kevin Blighe
★ 4.0k
0
votes
2
replies
4.0k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
2.2 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
4.0k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
2.2 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
2.7k
views
Comment:
Comment: Ensembl down???
2.2 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.8k
views
Comment:
Comment: tximport error: vroom
2.3 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.5k
views
Comment:
Comment: PCA percent variance DESeq2
2.4 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
666
views
Answer:
Answer: DEG by deseq2 by Race
2.5 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: affy package and SNP arrays
2.6 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
2.4k
views
Answer:
Answer: enhanced volcano , different -log10pvalue of the same gene
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.8k
views
Comment:
Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.8 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
3.8k
views
Comment:
Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.8 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
3.8k
views
Answer:
Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.8 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.2k
views
Comment:
Comment: How to import dataset from other software into DESeq2?
2.8 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
6.4k
views
Comment:
Comment: How to change the dot size in plotPCA?
2.9 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
967
views
Comment:
Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
2.9 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.0k
views
Answer:
Answer: BioC packages in cancer genomics
2.9 years ago
Kevin Blighe
★ 4.0k
2
votes
0
replies
2.8k
views
Answer:
Answer: Overlay points with EnhancedVolcano R
2.9 years ago
Kevin Blighe
★ 4.0k
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