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Answer: Answer: Difference between vst() and varianceStabilizingTransform()
4 months ago Kevin Blighe ★ 3.9k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
4 months ago Kevin Blighe ★ 3.9k
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2.1k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
updated 12 weeks ago by 3.8k • written 4 months ago by ★ 3.9k
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2.1k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
4 months ago Kevin Blighe ★ 3.9k
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2
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2.1k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
4 months ago Kevin Blighe ★ 3.9k
0
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1
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2.1k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
4 months ago Kevin Blighe ★ 3.9k
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1
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908
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Comment: Comment: Ensembl down???
4 months ago Kevin Blighe ★ 3.9k
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1.9k
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Comment: Comment: tximport error: vroom
6 months ago Kevin Blighe ★ 3.9k
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1.4k
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Comment: Comment: PCA percent variance DESeq2
8 months ago Kevin Blighe ★ 3.9k
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307
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Answer: Answer: DEG by deseq2 by Race
8 months ago Kevin Blighe ★ 3.9k
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575
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Comment: Comment: affy package and SNP arrays
9 months ago Kevin Blighe ★ 3.9k
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1.0k
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Answer: Answer: enhanced volcano , different -log10pvalue of the same gene
11 months ago Kevin Blighe ★ 3.9k
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1.6k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
12 months ago Kevin Blighe ★ 3.9k
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1.6k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
12 months ago Kevin Blighe ★ 3.9k
1
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1
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1.6k
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Answer: Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
12 months ago Kevin Blighe ★ 3.9k
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0
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651
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Comment: Comment: How to import dataset from other software into DESeq2?
12 months ago Kevin Blighe ★ 3.9k
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2.9k
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Comment: Comment: How to change the dot size in plotPCA?
13 months ago Kevin Blighe ★ 3.9k
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0
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528
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Comment: Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
13 months ago Kevin Blighe ★ 3.9k
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0
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523
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Answer: Answer: BioC packages in cancer genomics
13 months ago Kevin Blighe ★ 3.9k
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959
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Answer: Answer: Overlay points with EnhancedVolcano R
13 months ago Kevin Blighe ★ 3.9k
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0
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538
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Answer: Answer: Only display positive FC on volcano plot
13 months ago Kevin Blighe ★ 3.9k
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1.6k
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Comment: Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
14 months ago Kevin Blighe ★ 3.9k
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6.0k
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Comment: Comment: gene ID conversion
14 months ago Kevin Blighe ★ 3.9k
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1.1k
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Comment: Comment: Adding ellipse in PCAtools biplot
15 months ago Kevin Blighe ★ 3.9k
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1.1k
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Answer: Answer: Adding ellipse in PCAtools biplot
15 months ago Kevin Blighe ★ 3.9k
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0
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931
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Answer: Answer: PCA input data from DRAGEN RNA pipeline
17 months ago Kevin Blighe ★ 3.9k
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0
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495
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Answer: Answer: PCA plot, plus sign?
17 months ago Kevin Blighe ★ 3.9k
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1
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835
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Answer: Answer: Is it possible for the legend labels to be different from the Colcustom names?
17 months ago Kevin Blighe ★ 3.9k
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0
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690
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Comment: Comment: RNA-Seq Reads Count
17 months ago Kevin Blighe ★ 3.9k
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0
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594
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Answer: Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
18 months ago Kevin Blighe ★ 3.9k
1
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1
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676
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Answer: Answer: Second covariate
18 months ago Kevin Blighe ★ 3.9k
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0
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917
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Comment: Comment: Unable to over/ride colour scheme with custom key-value pairs
18 months ago Kevin Blighe ★ 3.9k
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0
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1.4k
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Comment: Comment: Biostrings multiple pattern match
18 months ago Kevin Blighe ★ 3.9k
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0
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1.6k
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Answer: Answer: Enhanced Volcano Error when drawing connectors
18 months ago Kevin Blighe ★ 3.9k
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1
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1.0k
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Answer: Answer: color scale ggcyto::autoplot
19 months ago Kevin Blighe ★ 3.9k
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0
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2.4k
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Comment: Comment: biomaRt finding transcript lenghts
19 months ago Kevin Blighe ★ 3.9k
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0
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549
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Comment: Comment: Interpret MetaVolcanoR plot
20 months ago Kevin Blighe ★ 3.9k
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0
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1.4k
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Comment: Comment: StringTie output as Ballgown input
22 months ago Kevin Blighe ★ 3.9k
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0
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1.3k
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Comment: Comment: I need cancer databases suggestion
22 months ago Kevin Blighe ★ 3.9k
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0
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3.3k
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Comment: Comment: KEGG Pathway in R
22 months ago Kevin Blighe ★ 3.9k
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0
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1.3k
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Comment: Comment: Italicise
22 months ago Kevin Blighe ★ 3.9k
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1
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1.3k
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Comment: Comment: Italicise
23 months ago Kevin Blighe ★ 3.9k
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1
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1.3k
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Comment: Comment: Italicise
23 months ago Kevin Blighe ★ 3.9k
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0
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770
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Comment: Comment: R: problem with running time-series analysis software: Mfuzz
23 months ago Kevin Blighe ★ 3.9k
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0
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2.4k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
23 months ago Kevin Blighe ★ 3.9k
1
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1
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2.4k
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Comment: Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
23 months ago Kevin Blighe ★ 3.9k
1
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1
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2.4k
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Answer: Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
23 months ago Kevin Blighe ★ 3.9k
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0
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1.4k
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Comment: Comment: Handling NA values in limma's voom design matrix
23 months ago Kevin Blighe ★ 3.9k
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0
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799
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Comment: Comment: different sample size from each individual
23 months ago Kevin Blighe ★ 3.9k
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1
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799
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Comment: Comment: different sample size from each individual
23 months ago Kevin Blighe ★ 3.9k
888 results • Page 1 of 18
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