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Answer: Answer: After running samtools, the featureCounts command crashed.
9 days ago Kevin Blighe ★ 4.0k
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412
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Answer: Answer: Problem with the TMB plot
9 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
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0
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284
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Answer: Answer: gene Set with high AUC score but no cells assigned to cell type
9 days ago Kevin Blighe ★ 4.0k
0
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0
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198
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Answer: Answer: featureCounts -L: high unassigned:mapq fraction
9 days ago Kevin Blighe ★ 4.0k
0
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0
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393
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Answer: Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
9 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
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0
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346
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Answer: Answer: incomplete imputation of missing values with LEA impute() function
9 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
0
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0
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157
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Answer: Answer: A problem occurs when running the monocle2
9 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
1
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1
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461
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Answer: Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
10 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
0
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1
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116
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Answer: Answer: VariantAnnotation not does escape = within header string quotes
10 days ago • updated 8 days ago Kevin Blighe ★ 4.0k
0
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1
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164
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Answer: Answer: Setting up a DESeq2 Design with Paired Data
10 days ago Kevin Blighe ★ 4.0k
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0
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2.7k
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Comment: Comment: DESeq2 output used for PCA plot on R studio
19 months ago Kevin Blighe ★ 4.0k
1
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1
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2.2k
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Answer: Answer: Difference between vst() and varianceStabilizingTransform()
23 months ago Kevin Blighe ★ 4.0k
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0
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2.4k
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Comment: Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
23 months ago Kevin Blighe ★ 4.0k
0
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1
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3.8k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
updated 22 months ago by 4.2k • written 23 months ago by ★ 4.0k
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1
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3.8k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago Kevin Blighe ★ 4.0k
0
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2
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3.8k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago Kevin Blighe ★ 4.0k
0
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1
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3.8k
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Comment: Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago Kevin Blighe ★ 4.0k
0
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1
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2.5k
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Comment: Comment: Ensembl down???
24 months ago Kevin Blighe ★ 4.0k
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0
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3.6k
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Comment: Comment: tximport error: vroom
2.1 years ago Kevin Blighe ★ 4.0k
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0
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3.3k
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Comment: Comment: PCA percent variance DESeq2
2.3 years ago Kevin Blighe ★ 4.0k
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0
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631
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Answer: Answer: DEG by deseq2 by Race
2.3 years ago Kevin Blighe ★ 4.0k
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0
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1.1k
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Comment: Comment: affy package and SNP arrays
2.4 years ago Kevin Blighe ★ 4.0k
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1
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2.2k
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Answer: Answer: enhanced volcano , different -log10pvalue of the same gene
2.5 years ago Kevin Blighe ★ 4.0k
0
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0
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3.6k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago Kevin Blighe ★ 4.0k
1
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1
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3.6k
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Comment: Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago Kevin Blighe ★ 4.0k
1
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1
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3.6k
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Answer: Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago Kevin Blighe ★ 4.0k
0
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0
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1.1k
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Comment: Comment: How to import dataset from other software into DESeq2?
2.6 years ago Kevin Blighe ★ 4.0k
0
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0
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6.2k
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Comment: Comment: How to change the dot size in plotPCA?
2.7 years ago Kevin Blighe ★ 4.0k
0
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0
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937
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Comment: Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
2.7 years ago Kevin Blighe ★ 4.0k
0
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0
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991
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Answer: Answer: BioC packages in cancer genomics
2.7 years ago Kevin Blighe ★ 4.0k
2
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0
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2.5k
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Answer: Answer: Overlay points with EnhancedVolcano R
2.7 years ago Kevin Blighe ★ 4.0k
0
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0
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1.2k
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Answer: Answer: Only display positive FC on volcano plot
2.7 years ago Kevin Blighe ★ 4.0k
0
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0
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3.5k
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Comment: Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
2.7 years ago Kevin Blighe ★ 4.0k
0
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0
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9.4k
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Comment: Comment: gene ID conversion
2.8 years ago Kevin Blighe ★ 4.0k
0
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0
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2.0k
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Comment: Comment: Adding ellipse in PCAtools biplot
2.8 years ago Kevin Blighe ★ 4.0k
1
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1
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2.0k
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Answer: Answer: Adding ellipse in PCAtools biplot
2.8 years ago Kevin Blighe ★ 4.0k
1
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0
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2.0k
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Answer: Answer: PCA input data from DRAGEN RNA pipeline
3.0 years ago Kevin Blighe ★ 4.0k
0
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0
replies
846
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Answer: Answer: PCA plot, plus sign?
3.0 years ago Kevin Blighe ★ 4.0k
0
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1
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1.6k
views
Answer: Answer: Is it possible for the legend labels to be different from the Colcustom names?
3.0 years ago Kevin Blighe ★ 4.0k
0
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0
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1.3k
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Comment: Comment: RNA-Seq Reads Count
3.1 years ago Kevin Blighe ★ 4.0k
1
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0
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1.2k
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Answer: Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
3.1 years ago Kevin Blighe ★ 4.0k
1
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1
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1.1k
views
Answer: Answer: Second covariate
3.1 years ago Kevin Blighe ★ 4.0k
0
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0
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1.7k
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Comment: Comment: Unable to over/ride colour scheme with custom key-value pairs
3.1 years ago Kevin Blighe ★ 4.0k
0
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0
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2.3k
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Comment: Comment: Biostrings multiple pattern match
3.1 years ago Kevin Blighe ★ 4.0k
1
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0
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3.3k
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Answer: Answer: Enhanced Volcano Error when drawing connectors
3.1 years ago Kevin Blighe ★ 4.0k
0
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1
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1.7k
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Answer: Answer: color scale ggcyto::autoplot
3.1 years ago Kevin Blighe ★ 4.0k
0
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0
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4.2k
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Comment: Comment: biomaRt finding transcript lenghts
3.2 years ago Kevin Blighe ★ 4.0k
0
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0
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981
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Comment: Comment: Interpret MetaVolcanoR plot
3.2 years ago Kevin Blighe ★ 4.0k
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0
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2.3k
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Comment: Comment: StringTie output as Ballgown input
3.4 years ago Kevin Blighe ★ 4.0k
0
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0
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1.8k
views
Comment: Comment: I need cancer databases suggestion
3.4 years ago Kevin Blighe ★ 4.0k
899 results • Page 1 of 18
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