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Answer:
Answer: After running samtools, the featureCounts command crashed.
9 days ago
Kevin Blighe
★ 4.0k
0
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0
replies
412
views
Answer:
Answer: Problem with the TMB plot
9 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
284
views
Answer:
Answer: gene Set with high AUC score but no cells assigned to cell type
9 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
198
views
Answer:
Answer: featureCounts -L: high unassigned:mapq fraction
9 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
393
views
Answer:
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset?
9 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
346
views
Answer:
Answer: incomplete imputation of missing values with LEA impute() function
9 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
157
views
Answer:
Answer: A problem occurs when running the monocle2
9 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
461
views
Answer:
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
10 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
116
views
Answer:
Answer: VariantAnnotation not does escape = within header string quotes
10 days ago • updated 8 days ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
164
views
Answer:
Answer: Setting up a DESeq2 Design with Paired Data
10 days ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.7k
views
Comment:
Comment: DESeq2 output used for PCA plot on R studio
19 months ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
2.2k
views
Answer:
Answer: Difference between vst() and varianceStabilizingTransform()
23 months ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.4k
views
Comment:
Comment: scRNA-seq as pseudobulk for DEseq2: does AggregateExpression() normalize counts?
23 months ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
3.8k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
updated 22 months ago by
shepherl
4.2k • written 23 months ago by
Kevin Blighe
★ 4.0k
0
votes
1
reply
3.8k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago
Kevin Blighe
★ 4.0k
0
votes
2
replies
3.8k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
3.8k
views
Comment:
Comment: DESeq2 - groups with biological replicates from the same patient
23 months ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
2.5k
views
Comment:
Comment: Ensembl down???
24 months ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.6k
views
Comment:
Comment: tximport error: vroom
2.1 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.3k
views
Comment:
Comment: PCA percent variance DESeq2
2.3 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
631
views
Answer:
Answer: DEG by deseq2 by Race
2.3 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: affy package and SNP arrays
2.4 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
2.2k
views
Answer:
Answer: enhanced volcano , different -log10pvalue of the same gene
2.5 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.6k
views
Comment:
Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
3.6k
views
Comment:
Comment: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
3.6k
views
Answer:
Answer: EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
2.6 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.1k
views
Comment:
Comment: How to import dataset from other software into DESeq2?
2.6 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
6.2k
views
Comment:
Comment: How to change the dot size in plotPCA?
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
937
views
Comment:
Comment: Microarray Data - Matching Probe ID's to Gene Expression Symbols
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
991
views
Answer:
Answer: BioC packages in cancer genomics
2.7 years ago
Kevin Blighe
★ 4.0k
2
votes
0
replies
2.5k
views
Answer:
Answer: Overlay points with EnhancedVolcano R
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.2k
views
Answer:
Answer: Only display positive FC on volcano plot
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
3.5k
views
Comment:
Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
2.7 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
9.4k
views
Comment:
Comment: gene ID conversion
2.8 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.0k
views
Comment:
Comment: Adding ellipse in PCAtools biplot
2.8 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
2.0k
views
Answer:
Answer: Adding ellipse in PCAtools biplot
2.8 years ago
Kevin Blighe
★ 4.0k
1
vote
0
replies
2.0k
views
Answer:
Answer: PCA input data from DRAGEN RNA pipeline
3.0 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
846
views
Answer:
Answer: PCA plot, plus sign?
3.0 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
1.6k
views
Answer:
Answer: Is it possible for the legend labels to be different from the Colcustom names?
3.0 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.3k
views
Comment:
Comment: RNA-Seq Reads Count
3.1 years ago
Kevin Blighe
★ 4.0k
1
vote
0
replies
1.2k
views
Answer:
Answer: creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
3.1 years ago
Kevin Blighe
★ 4.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: Second covariate
3.1 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.7k
views
Comment:
Comment: Unable to over/ride colour scheme with custom key-value pairs
3.1 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.3k
views
Comment:
Comment: Biostrings multiple pattern match
3.1 years ago
Kevin Blighe
★ 4.0k
1
vote
0
replies
3.3k
views
Answer:
Answer: Enhanced Volcano Error when drawing connectors
3.1 years ago
Kevin Blighe
★ 4.0k
0
votes
1
reply
1.7k
views
Answer:
Answer: color scale ggcyto::autoplot
3.1 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
4.2k
views
Comment:
Comment: biomaRt finding transcript lenghts
3.2 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
981
views
Comment:
Comment: Interpret MetaVolcanoR plot
3.2 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
2.3k
views
Comment:
Comment: StringTie output as Ballgown input
3.4 years ago
Kevin Blighe
★ 4.0k
0
votes
0
replies
1.8k
views
Comment:
Comment: I need cancer databases suggestion
3.4 years ago
Kevin Blighe
★ 4.0k
899 results • Page
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