User: charles.foster

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Posts by charles.foster

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Finding genes that are expressed only in one condition within a contrast
... Hi, I have carried out differential expression analyses comparing conditions using DESeq2. Intuitively, I have considered genes to be expressed if they have a count of at least 10 in at least some libraries (sensu Chen et al: https://f1000research.com/articles/5-1438). Hence, I carried out a filter ...
deseq2 filter written 8 days ago by charles.foster0 • updated 8 days ago by Michael Love22k
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Comment: C: Interpreting the results from lfcShrink() with apeglm in DESeq2
... Hi Michael, Great- thanks for the clarification and great program! ...
written 5 months ago by charles.foster0
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Interpreting the results from lfcShrink() with apeglm in DESeq2
... Dear all, I'm relatively new to differential expression analysis of RNA-Seq data, and I'm working my way through the DESeq2 vignette to come to terms with how it works. I'm looking to obtain a set of genes with a log2 fold change >2, and an adjusted p-value of <0.001. Following the "standard" ...
deseq2 lfcshrink apeglm written 5 months ago by charles.foster0 • updated 5 months ago by Michael Love22k

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