Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
264
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
5 days ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
264
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
5 days ago mohammedtoufiq91 ▴ 10
3
votes
6
replies
264
views
Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 5 days ago by 47k • written 6 days ago by ▴ 10
0
votes
2
replies
264
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
updated 5 days ago by 47k • written 5 days ago by ▴ 10
0
votes
1
reply
277
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
10 days ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
277
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
10 days ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
277
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
10 days ago mohammedtoufiq91 ▴ 10
5
votes
7
replies
277
views
Question about setting threshold using filtering by expression on genes in edgeR
filtering RNA-Seq CPM edgeR filterByExpr
updated 10 days ago by 47k • written 10 days ago by ▴ 10
0
votes
0
replies
475
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
9 weeks ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
475
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
9 weeks ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
475
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
9 weeks ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
475
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
10 weeks ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
475
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
10 weeks ago mohammedtoufiq91 ▴ 10
3
votes
9
replies
475
views
Question about filter by expression (filterByExpr) in edgeR
CPM filterByExpr edgeR design model.matrix
10 weeks ago • updated 9 weeks ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
197
views
Comment: Comment: Question about avereps function of limma
12 weeks ago mohammedtoufiq91 ▴ 10
2
votes
2
replies
197
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 12 weeks ago by 47k • written 12 weeks ago by ▴ 10
0
votes
0
replies
569
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
569
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
569
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
569
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
3 months ago mohammedtoufiq91 ▴ 10
6
votes
11
replies
569
views
Error in running Dispersion estimation analysis in EdgeR
edgeR DifferentialExpression limma design RNASeq
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
569
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
3 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
465
views
Comment: Comment: Which input file is used for DGEList in EgdeR?
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
465
views
Comment: Comment: Which input file is used for DGEList in EgdeR?
3 months ago mohammedtoufiq91 ▴ 10
3
votes
5
replies
465
views
Which input file is used for DGEList in EgdeR?
salmon edgeR tximport nf-core gene_counts
3 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
786
views
Comment: Comment: How to identify top most variable genes from log2 normalized data?
5 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
786
views
Comment: Comment: How to identify top most variable genes from log2 normalized data?
5 months ago mohammedtoufiq91 ▴ 10
2
votes
5
replies
786
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 3 months ago by 47k • written 5 months ago by ▴ 10
0
votes
0
replies
414
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
5 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
414
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
5 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
414
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
5 months ago mohammedtoufiq91 ▴ 10
3
votes
6
replies
414
views
Question about making Contrasts for comparisons and assignment of values
edgeR contrasts limma design model.matrix
5 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
662
views
Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
6 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
662
views
Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
6 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
662
views
Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
6 months ago mohammedtoufiq91 ▴ 10
5
votes
6
replies
662
views
How to interpret Histogram of average log2 CPM filtering in EdgeR?
CPM filterByExpr edgeR histogram rowsums
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
296
views
Comment: Comment: Extracting specific comparisons after fitting model in EdgeR
6 months ago mohammedtoufiq91 ▴ 10
1
vote
2
replies
296
views
Extracting specific comparisons after fitting model in EdgeR
edgeR limma design RNASeq model.matrix
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
359
views
Comment: Comment: Does negative corfit$consensus cause issues while fitting a model in limma
6 months ago mohammedtoufiq91 ▴ 10
1
vote
2
replies
359
views
Does negative corfit$consensus cause issues while fitting a model in limma
limma R design model.matrix
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
973
views
Comment: Comment: Question on performing filtering by gene expression on a normalized matrix in li
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
523
views
Comment: Comment: Error while reading rsem files in tximport
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
523
views
Comment: Comment: Error while reading rsem files in tximport
6 months ago mohammedtoufiq91 ▴ 10
2
votes
3
replies
523
views
Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.3k
views
Comment: Comment: Possibility of using TPM or FPKM values in edgeR for differential expression ana
6 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
1.3k
views
Comment: Comment: Possibility of using TPM or FPKM values in edgeR for differential expression ana
6 months ago mohammedtoufiq91 ▴ 10
2
votes
4
replies
1.3k
views
Possibility of using TPM or FPKM values in edgeR for differential expression analysis?
DESeq2 R edgeR Normalization RNASeq
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
339
views
Comment: Comment: How to process and analyze Total RNA-Seq data?
6 months ago mohammedtoufiq91 ▴ 10
1
vote
2
replies
339
views
How to process and analyze Total RNA-Seq data?
DESeq2 R edgeR Normalization RNASeq
6 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
973
views
Comment: Comment: Question on performing filtering by gene expression on a normalized matrix in li
8 months ago mohammedtoufiq91 ▴ 10
82 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6