Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
757
views
Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
8 weeks ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
757
views
Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
8 weeks ago mohammedtoufiq91 ▴ 10
2
votes
9
replies
757
views
Transcript expression analysis in edgeR from gtf file obtained from merging long read rna-seq and standard gencode gtf
RNASeq edgeR LongRead Transcript
8 weeks ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
757
views
Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
8 weeks ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
757
views
Comment: Comment: Transcript expression analysis in edgeR from gtf file obtained from merging long
8 weeks ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
803
views
Comment: Comment: Transcript expression analysis using EdgeR
11 weeks ago mohammedtoufiq91 ▴ 10
3
votes
2
replies
803
views
Transcript expression analysis using EdgeR
edgeR Transcript RNASeq
11 weeks ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
3.3k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
10 months ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
3.3k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
10 months ago mohammedtoufiq91 ▴ 10
6
votes
10
replies
3.3k
views
What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 10 months ago by ★ 5.0k • written 10 months ago by ▴ 10
0
votes
1
reply
3.3k
views
Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
10 months ago mohammedtoufiq91 ▴ 10
3
votes
2
replies
1.2k
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
16 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.2k
views
Answer: Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
16 months ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
2.0k
views
Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
2.2 years ago mohammedtoufiq91 ▴ 10
2
votes
5
replies
2.0k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R edgeR RNASeq
2.2 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.0k
views
Comment: Comment: Question about RNAseq analysis in EdgeR to identify common and donor specific di
2.2 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.5k
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
2.4 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.5k
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
2.4 years ago mohammedtoufiq91 ▴ 10
3
votes
6
replies
1.5k
views
Question on constructing design matrix and defining contrasts for analysis
wgcna DESeq2 edgeR limma design
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
0
votes
2
replies
1.5k
views
Comment: Comment: Question on constructing design matrix and defining contrasts for analysis
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
2.4 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
2.4 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.1k
views
Comment: Comment: Question about setting threshold using filtering by expression on genes in edgeR
2.4 years ago mohammedtoufiq91 ▴ 10
5
votes
7
replies
2.1k
views
Question about setting threshold using filtering by expression on genes in edgeR
filtering RNA-Seq CPM edgeR filterByExpr
updated 2.4 years ago by 53k • written 2.4 years ago by ▴ 10
0
votes
0
replies
3.3k
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
2.5 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
3.3k
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
2.5 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
3.3k
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
2.5 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
3.3k
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
2.5 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
3.3k
views
Comment: Comment: Question about filter by expression (filterByExpr) in edgeR
2.5 years ago mohammedtoufiq91 ▴ 10
3
votes
9
replies
3.3k
views
Question about filter by expression (filterByExpr) in edgeR
CPM filterByExpr edgeR design model.matrix
2.5 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
1.3k
views
Comment: Comment: Question about avereps function of limma
2.6 years ago mohammedtoufiq91 ▴ 10
2
votes
2
replies
1.3k
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 10
0
votes
0
replies
2.3k
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
2.6 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
2.7 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
2.7 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
2.7 years ago mohammedtoufiq91 ▴ 10
6
votes
11
replies
2.3k
views
Error in running Dispersion estimation analysis in EdgeR
edgeR DifferentialExpression limma design RNASeq
2.7 years ago • updated 2.6 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
2.3k
views
Comment: Comment: Error in running Dispersion estimation analysis in EdgeR
2.7 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
4.0k
views
Comment: Comment: Which input file is used for DGEList in EgdeR?
2.7 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
4.0k
views
Comment: Comment: Which input file is used for DGEList in EgdeR?
2.7 years ago mohammedtoufiq91 ▴ 10
6
votes
10
replies
4.0k
views
Which input file is used for DGEList in EgdeR?
salmon edgeR tximport nf-core gene_counts
updated 17 months ago by • 0 • written 2.7 years ago by ▴ 10
0
votes
1
reply
6.3k
views
Comment: Comment: How to identify top most variable genes from log2 normalized data?
2.8 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
6.3k
views
Comment: Comment: How to identify top most variable genes from log2 normalized data?
2.8 years ago mohammedtoufiq91 ▴ 10
4
votes
5
replies
6.3k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.7 years ago by 53k • written 2.8 years ago by ▴ 10
0
votes
0
replies
1.8k
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.8 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.8 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
1.8k
views
Comment: Comment: Question about making Contrasts for comparisons and assignment of values
2.8 years ago mohammedtoufiq91 ▴ 10
3
votes
6
replies
1.8k
views
Question about making Contrasts for comparisons and assignment of values
edgeR contrasts limma design model.matrix
2.8 years ago mohammedtoufiq91 ▴ 10
0
votes
0
replies
3.2k
views
Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2.8 years ago mohammedtoufiq91 ▴ 10
0
votes
1
reply
3.2k
views
Comment: Comment: How to interpret Histogram of average log2 CPM filtering in EdgeR?
2.8 years ago mohammedtoufiq91 ▴ 10
98 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6