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Comment: Comment: ANOVA like approach of edgeR
1 day ago Gordon Smyth 52k
3
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1
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646
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Answer: Answer: ANOVA like approach of edgeR
6 days ago Gordon Smyth 52k
0
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1
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322
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Answer: Answer: Create Illmina bead summary data
6 days ago • updated 5 days ago Gordon Smyth 52k
1
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467
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Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
8 days ago Gordon Smyth 52k
2
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1
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467
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Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
8 days ago Gordon Smyth 52k
0
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0
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186
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Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
9 days ago • updated 8 days ago Gordon Smyth 52k
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1
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1.5k
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Comment: Comment: limma technical repeat correction
10 days ago • updated 9 days ago Gordon Smyth 52k
2
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466
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Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
10 days ago • updated 9 days ago Gordon Smyth 52k
0
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0
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127
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Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
10 days ago • updated 9 days ago Gordon Smyth 52k
1
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1
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819
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Answer: Answer: [How to construct a model.matrix ]
14 days ago • updated 11 days ago Gordon Smyth 52k
1
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1
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536
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Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
15 days ago Gordon Smyth 52k
2
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1
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536
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Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
15 days ago Gordon Smyth 52k
1
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1
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1.5k
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Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
20 days ago Gordon Smyth 52k
1
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1
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1.5k
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Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
21 days ago • updated 17 days ago Gordon Smyth 52k
1
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1
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1.0k
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Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
22 days ago Gordon Smyth 52k
1
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1
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882
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Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
23 days ago Gordon Smyth 52k
1
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1
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1.5k
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Comment: Comment: limma technical repeat correction
27 days ago • updated 23 days ago Gordon Smyth 52k
1
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1
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1.5k
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Comment: Comment: limma technical repeat correction
29 days ago • updated 28 days ago Gordon Smyth 52k
0
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1
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1.5k
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Comment: Comment: limma technical repeat correction
4 weeks ago • updated 29 days ago Gordon Smyth 52k
2
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0
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755
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Comment: Comment: Analysis of 2*4 factorial design
4 weeks ago • updated 28 days ago Gordon Smyth 52k
1
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0
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1.7k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
4 weeks ago • updated 29 days ago Gordon Smyth 52k
0
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1
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573
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Comment: Comment: RNA-seq: samples form different experiments, how to do DGEs?
4 weeks ago Gordon Smyth 52k
1
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1
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1.1k
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Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
4 weeks ago Gordon Smyth 52k
0
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1
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573
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Answer: Answer: RNA-seq: samples form different experiments, how to do DGEs?
4 weeks ago Gordon Smyth 52k
2
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1
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755
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Answer: Answer: Analysis of 2*4 factorial design
4 weeks ago Gordon Smyth 52k
1
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1
reply
1.1k
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Comment: Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
4 weeks ago Gordon Smyth 52k
0
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2
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1.5k
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Answer: Answer: limma technical repeat correction
4 weeks ago • updated 29 days ago Gordon Smyth 52k
1
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0
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1.4k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
5 weeks ago Gordon Smyth 52k
1
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1
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1.4k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
5 weeks ago Gordon Smyth 52k
0
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0
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1.4k
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Comment: Comment: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
5 weeks ago Gordon Smyth 52k
2
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1
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1.4k
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Answer: Answer: LIMMA Differing P-Values for Treatment-Contrast Parameterization vs Group-Means
5 weeks ago Gordon Smyth 52k
2
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1
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1.1k
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Answer: Answer: Zero intra-block correlation in RRBS analysis using voomLmFit with block
5 weeks ago Gordon Smyth 52k
0
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0
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896
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Comment: Comment: Bioconductor 3.20 Release Schedule
6 weeks ago Gordon Smyth 52k
0
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1
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896
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Answer: Answer: Bioconductor 3.20 Release Schedule
6 weeks ago Gordon Smyth 52k
1
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0
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286
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Answer: Answer: Automatically generate contrasts from a model matrix / formula
6 weeks ago Gordon Smyth 52k
2
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1
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283
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Answer: Answer: How to subset voomLmFit (MArrayLM) object?
6 weeks ago Gordon Smyth 52k
4
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1
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309
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Answer: Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
7 weeks ago • updated 6 weeks ago Gordon Smyth 52k
0
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1
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337
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Answer: Answer: EdgeR - Apparent Wrong Direction of logFC with Low Count Data
9 weeks ago • updated 8 weeks ago Gordon Smyth 52k
0
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0
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431
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Comment: Comment: Question on performing ANOVA-like analysis using limma
9 weeks ago Gordon Smyth 52k
0
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0
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431
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Answer: Answer: Question on performing ANOVA-like analysis using limma
9 weeks ago Gordon Smyth 52k
0
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0
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781
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
9 weeks ago Gordon Smyth 52k
0
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2
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781
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
11 weeks ago Gordon Smyth 52k
0
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0
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781
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Comment: Comment: AffylmGUI does not start wit R 4.4.1
11 weeks ago Gordon Smyth 52k
1
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0
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431
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Answer: Answer: Help with design matrix for RNA-seq data using edgeR
11 weeks ago Gordon Smyth 52k
0
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0
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792
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
3 months ago Gordon Smyth 52k
0
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0
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792
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
3 months ago Gordon Smyth 52k
1
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1
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792
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Answer: Answer: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
3 months ago Gordon Smyth 52k
0
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1
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792
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Comment: Comment: Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multip
3 months ago Gordon Smyth 52k
3
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0
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482
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Answer: Answer: voom does not seem to properly correct for library size
3 months ago Gordon Smyth 52k
1
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2
replies
781
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Answer: Answer: AffylmGUI does not start wit R 4.4.1
3 months ago Gordon Smyth 52k
5,184 results • Page 1 of 104
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