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Answer: Answer: EdgeR Biological CVs
11 months ago Gordon Smyth 53k
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864
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Answer: Answer: Differential variability modelling with vst() expression
11 months ago Gordon Smyth 53k
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1.6k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
11 months ago Gordon Smyth 53k
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740
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Answer: Answer: Mean variance curve troubleshoot filtering
11 months ago Gordon Smyth 53k
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1.1k
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
11 months ago Gordon Smyth 53k
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1.6k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
11 months ago Gordon Smyth 53k
0
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1
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1.6k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
12 months ago • updated 11 months ago Gordon Smyth 53k
2
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1
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1.1k
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Answer: Answer: How do I fix an odd voom plot in a combined dataset?
12 months ago Gordon Smyth 53k
1
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1
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1.6k
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Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
12 months ago Gordon Smyth 53k
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3.9k
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Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
12 months ago Gordon Smyth 53k
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821
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Answer: Answer: Cross-validation with multiple control subgroups in limma
12 months ago Gordon Smyth 53k
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1.6k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
12 months ago Gordon Smyth 53k
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1.6k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
12 months ago Gordon Smyth 53k
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1.6k
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Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
12 months ago Gordon Smyth 53k
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1.7k
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Answer: Answer: Limma - using both array and spot weights in lmFit
12 months ago Gordon Smyth 53k
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2.6k
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Comment: Comment: Feature Counts - potential bug with outfile.jcounts
12 months ago Gordon Smyth 53k
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2
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2.6k
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Answer: Answer: Feature Counts - potential bug with outfile.jcounts
12 months ago Gordon Smyth 53k
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901
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Answer: Answer: Feature Counts -R XS Read Assignment Tag
12 months ago Gordon Smyth 53k
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745
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Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
12 months ago Gordon Smyth 53k
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1.4k
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Answer: Answer: RSubread output significantly different from bash Subread output
12 months ago Gordon Smyth 53k
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961
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Answer: Answer: sva: get a sv for RIN scores
12 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Differential Expression Genes as Independent Variables
12 months ago Gordon Smyth 53k
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2
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746
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Answer: Answer: contrast matrix design for a continuous variable
13 months ago Gordon Smyth 53k
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1.8k
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Comment: Comment: Differential Expression Genes as Independent Variables
13 months ago Gordon Smyth 53k
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3
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1.1k
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Answer: Answer: Crossover design with limma
13 months ago • updated 12 months ago Gordon Smyth 53k
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1.8k
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Answer: Answer: Differential Expression Genes as Independent Variables
13 months ago Gordon Smyth 53k
1
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1
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3.5k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
13 months ago Gordon Smyth 53k
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1
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3.5k
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Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
13 months ago Gordon Smyth 53k
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1
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3.5k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
13 months ago Gordon Smyth 53k
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0
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1.5k
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Comment: Comment: ANOVA like approach of edgeR
13 months ago Gordon Smyth 53k
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1
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1.5k
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Answer: Answer: ANOVA like approach of edgeR
13 months ago Gordon Smyth 53k
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1
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742
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Answer: Answer: Create Illmina bead summary data
13 months ago Gordon Smyth 53k
1
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0
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979
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Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
13 months ago Gordon Smyth 53k
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979
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Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
13 months ago Gordon Smyth 53k
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0
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589
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Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
13 months ago Gordon Smyth 53k
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2.8k
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Comment: Comment: limma technical repeat correction
13 months ago Gordon Smyth 53k
2
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0
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1.4k
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Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
13 months ago Gordon Smyth 53k
0
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0
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429
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Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
13 months ago Gordon Smyth 53k
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1
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1.4k
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Answer: Answer: [How to construct a model.matrix ]
13 months ago Gordon Smyth 53k
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1
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1.2k
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Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
13 months ago Gordon Smyth 53k
2
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1
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1.2k
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Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
13 months ago Gordon Smyth 53k
1
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1
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2.6k
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Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
13 months ago Gordon Smyth 53k
1
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1
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2.6k
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Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
13 months ago Gordon Smyth 53k
1
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1
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2.6k
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Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
13 months ago Gordon Smyth 53k
1
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1
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1.5k
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Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
13 months ago Gordon Smyth 53k
1
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1
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2.8k
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Comment: Comment: limma technical repeat correction
14 months ago • updated 13 months ago Gordon Smyth 53k
1
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1
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2.8k
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Comment: Comment: limma technical repeat correction
14 months ago Gordon Smyth 53k
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2.8k
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Comment: Comment: limma technical repeat correction
14 months ago Gordon Smyth 53k
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1.2k
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Comment: Comment: Analysis of 2*4 factorial design
14 months ago Gordon Smyth 53k
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0
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3.4k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
14 months ago Gordon Smyth 53k
5,313 results • Page 3 of 107
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