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Answer: Answer: NEED FOR NESSASORY HELP
7 months ago Gordon Smyth 52k
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414
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Answer: Answer: Gene-by-sample covariates in limma
7 months ago Gordon Smyth 52k
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1.1k
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
7 months ago • updated 6 months ago Gordon Smyth 52k
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2.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Gordon Smyth 52k
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445
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Answer: Answer: Improving the design matrices vignette in RNAseq123
7 months ago Gordon Smyth 52k
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721
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Answer: Answer: Citation for edgeR user guide
7 months ago Gordon Smyth 52k
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436
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
7 months ago Gordon Smyth 52k
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982
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Comment: Comment: FilterByExpr low counts with small sample size
7 months ago Gordon Smyth 52k
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2.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Gordon Smyth 52k
2
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1
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2.2k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
7 months ago Gordon Smyth 52k
1
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0
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2.2k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Gordon Smyth 52k
0
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1
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570
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Answer: Answer: RNAseq:Technical replicates from different batches
7 months ago Gordon Smyth 52k
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551
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Comment: Comment: Finding DEGs by using edgeR
7 months ago Gordon Smyth 52k
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982
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Answer: Answer: FilterByExpr low counts with small sample size
7 months ago Gordon Smyth 52k
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1
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372
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Answer: Answer: How to make DGEList and design matrix by edgeR package
7 months ago Gordon Smyth 52k
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551
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Answer: Answer: Finding DEGs by using edgeR
7 months ago Gordon Smyth 52k
3
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1
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842
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Answer: Answer: Log-cpm values from limma
7 months ago Gordon Smyth 52k
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1
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982
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Comment: Comment: FilterByExpr low counts with small sample size
7 months ago Gordon Smyth 52k
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1.9k
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Comment: Comment: Batch correction and repeated measures
7 months ago Gordon Smyth 52k
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1
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1.2k
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Comment: Comment: Methylation Analysis experiment design using Limma
7 months ago Gordon Smyth 52k
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1.2k
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Answer: Answer: Methylation Analysis experiment design using Limma
7 months ago Gordon Smyth 52k
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1.5k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
7 months ago Gordon Smyth 52k
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1
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1.5k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
7 months ago Gordon Smyth 52k
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0
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543
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Answer: Answer: Differentially expressed genes in monocle pseudotime
7 months ago Gordon Smyth 52k
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0
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861
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Answer: Answer: permutation test in edgeR
7 months ago Gordon Smyth 52k
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626
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Answer: Answer: Why is my gene not significantly differentially expressed?
7 months ago Gordon Smyth 52k
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2
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1.5k
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Comment: Comment: Light difference when using coef vs omit a group when compare 3 groups.
7 months ago Gordon Smyth 52k
2
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1
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1.5k
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Answer: Answer: Light difference when using coef vs omit a group when compare 3 groups.
7 months ago Gordon Smyth 52k
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0
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351
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Answer: Answer: Limma design matrix only showing 3/4 treatments?
7 months ago Gordon Smyth 52k
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1
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Gordon Smyth 52k
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0
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Gordon Smyth 52k
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0
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494
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Comment: Comment: Regressing out batch effects
7 months ago Gordon Smyth 52k
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1
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Gordon Smyth 52k
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0
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
0
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1
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714
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Comment: Comment: Using a change in a continuous explanatory variable to test changes in gene expr
7 months ago Gordon Smyth 52k
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1
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
1
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1
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714
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Answer: Answer: Using a change in a continuous explanatory variable to test changes in gene expr
7 months ago Gordon Smyth 52k
0
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1
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516
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Answer: Answer: edgeR analysis: glm functions and offset matrix
7 months ago Gordon Smyth 52k
1
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0
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
2
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1
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
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1
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
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1
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
0
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1
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 months ago Gordon Smyth 52k
1
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1
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Gordon Smyth 52k
0
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1
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831
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
8 months ago Gordon Smyth 52k
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1
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831
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
8 months ago Gordon Smyth 52k
1
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0
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago Gordon Smyth 52k
1
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2
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3.2k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago Gordon Smyth 52k
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