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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago Gordon Smyth 52k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago Gordon Smyth 52k
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Comment: Comment: Differing results from plotMDS and PCAtools
8 months ago Gordon Smyth 52k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago Gordon Smyth 52k
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Comment: Comment: Differing results from plotMDS and PCAtools
8 months ago Gordon Smyth 52k
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706
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
8 months ago Gordon Smyth 52k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
8 months ago • updated 7 months ago Gordon Smyth 52k
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706
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
8 months ago Gordon Smyth 52k
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1.2k
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Answer: Answer: Differing results from plotMDS and PCAtools
8 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
8 months ago Gordon Smyth 52k
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886
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Answer: Answer: Microarray Limma Model fitting and DEG
8 months ago Gordon Smyth 52k
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922
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Comment: Comment: DEG Filtering
8 months ago Gordon Smyth 52k
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886
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Answer: Answer: Microarray Limma Model fitting and DEG
8 months ago Gordon Smyth 52k
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1.7k
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Comment: Comment: limma models out of memory issue on Slurm HPC
8 months ago Gordon Smyth 52k
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Answer: Answer: limma models out of memory issue on Slurm HPC
8 months ago • updated 7 months ago Gordon Smyth 52k
2
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798
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 months ago Gordon Smyth 52k
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798
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Comment: Comment: Batch Effect Correction, Gene Filtering
8 months ago Gordon Smyth 52k
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566
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
8 months ago Gordon Smyth 52k
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
8 months ago Gordon Smyth 52k
1
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1
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922
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Comment: Comment: DEG Filtering
8 months ago Gordon Smyth 52k
1
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922
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Comment: Comment: DEG Filtering
8 months ago Gordon Smyth 52k
1
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0
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575
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
8 months ago Gordon Smyth 52k
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575
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
8 months ago Gordon Smyth 52k
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Comment: Comment: limma: vooma mean-variance trend and data filtration
8 months ago Gordon Smyth 52k
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388
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
8 months ago Gordon Smyth 52k
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922
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Answer: Answer: DEG Filtering
8 months ago Gordon Smyth 52k
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563
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Answer: Answer: RNAseq analysis
8 months ago Gordon Smyth 52k
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540
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Answer: Answer: between lane normalization upper quantile
8 months ago Gordon Smyth 52k
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511
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
8 months ago Gordon Smyth 52k
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856
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Answer: Answer: DESeq2 filtering vs edgeR filtering
8 months ago Gordon Smyth 52k
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1.0k
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Comment: Comment: limma: vooma mean-variance trend and data filtration
8 months ago Gordon Smyth 52k
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714
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
8 months ago Gordon Smyth 52k
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Answer: Answer: limma: vooma mean-variance trend and data filtration
8 months ago Gordon Smyth 52k
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870
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 months ago Gordon Smyth 52k
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870
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Answer: Answer: Constrast for Time Course Experiments using Limma
8 months ago Gordon Smyth 52k
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699
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Comment: Comment: Differential enrichment analysis
8 months ago Gordon Smyth 52k
1
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1.6k
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
8 months ago Gordon Smyth 52k
1
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1
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870
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 months ago Gordon Smyth 52k
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1.2k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 months ago Gordon Smyth 52k
0
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1
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1.6k
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
8 months ago Gordon Smyth 52k
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1.2k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
8 months ago Gordon Smyth 52k
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1.2k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 months ago • updated 8 months ago Gordon Smyth 52k
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405
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
9 months ago • updated 8 months ago Gordon Smyth 52k
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1.2k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 months ago Gordon Smyth 52k
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1.2k
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Answer: Answer: Strange logFC values in differential methylation site anslysis
9 months ago Gordon Smyth 52k
2
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0
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869
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Answer: Answer: DGE analysis with LIMMA
9 months ago Gordon Smyth 52k
0
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0
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509
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Answer: Answer: ExactTest vs QLFTest
9 months ago Gordon Smyth 52k
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1
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652
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
9 months ago Gordon Smyth 52k
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652
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
9 months ago Gordon Smyth 52k
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699
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Answer: Answer: Differential enrichment analysis
9 months ago Gordon Smyth 52k
5,185 results • Page 4 of 104
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