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2
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Answer: Answer: Inconsistent nullp and goseq enrichment results across operating systems
18 months ago Gordon Smyth 53k
0
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Comment: Comment: DE analysis in EdgeR /Can any one please help me.
18 months ago Gordon Smyth 53k
0
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1.1k
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Answer: Answer: DE analysis in EdgeR /Can any one please help me.
18 months ago Gordon Smyth 53k
1
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1.3k
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Comment: Comment: Differences in Limma and Dreamlet random effects from confounded dataset
18 months ago Gordon Smyth 53k
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2.0k
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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
18 months ago Gordon Smyth 53k
0
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0
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2.3k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
18 months ago Gordon Smyth 53k
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2.3k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
18 months ago Gordon Smyth 53k
0
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1
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2.3k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
18 months ago Gordon Smyth 53k
0
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1
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2.0k
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Answer: Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
18 months ago Gordon Smyth 53k
1
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1
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1.8k
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Comment: Comment: Using both voom and removeBatchEffect, will they double adjust the data or is it
18 months ago Gordon Smyth 53k
3
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1
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1.8k
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Answer: Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
18 months ago Gordon Smyth 53k
1
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1.2k
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Comment: Comment: Warning message when running limma with covariates
18 months ago Gordon Smyth 53k
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1.2k
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Answer: Answer: Warning message when running limma with covariates
18 months ago Gordon Smyth 53k
0
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2
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2.3k
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Answer: Answer: limma comparison for small sample size and how to get covariance matrix
18 months ago Gordon Smyth 53k
1
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1
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1.0k
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Answer: Answer: Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a rando
19 months ago Gordon Smyth 53k
1
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1
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
1
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1
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
1
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1
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
0
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1
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
0
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1
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
0
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2.1k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
19 months ago Gordon Smyth 53k
0
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0
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780
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Answer: Answer: Ploting of normalized counts after batch removal
19 months ago Gordon Smyth 53k
1
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0
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837
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Answer: Answer: Subsetting RNAseq data | voomaByGroup()
20 months ago Gordon Smyth 53k
2
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1
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1.2k
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Answer: Answer: How to correctly adjust for gender in edgeR
20 months ago Gordon Smyth 53k
1
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0
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1.1k
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
20 months ago Gordon Smyth 53k
0
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1
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1.1k
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
20 months ago Gordon Smyth 53k
1
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1
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1.1k
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
20 months ago Gordon Smyth 53k
2
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0
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1.6k
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Comment: Comment: Log-cpm values from limma
20 months ago Gordon Smyth 53k
1
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1
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2.0k
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Comment: Comment: Method to find pathways different between 2 groups
20 months ago Gordon Smyth 53k
1
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1
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2.0k
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Answer: Answer: Method to find pathways different between 2 groups
20 months ago Gordon Smyth 53k
0
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0
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1.3k
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Comment: Comment: package goseq seems to be not available on the latest version of R
20 months ago Gordon Smyth 53k
1
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0
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1.2k
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
20 months ago Gordon Smyth 53k
0
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1
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1.3k
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Answer: Answer: package goseq seems to be not available on the latest version of R
20 months ago Gordon Smyth 53k
0
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0
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674
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Answer: Answer: NEED FOR NESSASORY HELP
20 months ago Gordon Smyth 53k
0
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0
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758
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Answer: Answer: Gene-by-sample covariates in limma
20 months ago Gordon Smyth 53k
3
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2
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1.8k
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
20 months ago Gordon Smyth 53k
1
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1
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3.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
20 months ago Gordon Smyth 53k
1
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1
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762
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Answer: Answer: Improving the design matrices vignette in RNAseq123
20 months ago Gordon Smyth 53k
1
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0
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1.8k
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Answer: Answer: Citation for edgeR user guide
20 months ago Gordon Smyth 53k
0
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1
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829
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
20 months ago Gordon Smyth 53k
1
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1
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1.9k
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Comment: Comment: FilterByExpr low counts with small sample size
20 months ago Gordon Smyth 53k
1
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1
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3.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
20 months ago Gordon Smyth 53k
2
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1
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3.8k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
20 months ago Gordon Smyth 53k
1
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0
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3.8k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
20 months ago Gordon Smyth 53k
0
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1
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1.3k
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Answer: Answer: RNAseq:Technical replicates from different batches
21 months ago Gordon Smyth 53k
0
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0
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1.0k
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Comment: Comment: Finding DEGs by using edgeR
21 months ago Gordon Smyth 53k
3
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1
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1.9k
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Answer: Answer: FilterByExpr low counts with small sample size
21 months ago Gordon Smyth 53k
0
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1
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744
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Answer: Answer: How to make DGEList and design matrix by edgeR package
21 months ago Gordon Smyth 53k
0
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1
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1.0k
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Answer: Answer: Finding DEGs by using edgeR
21 months ago Gordon Smyth 53k
3
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1
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1.6k
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Answer: Answer: Log-cpm values from limma
21 months ago Gordon Smyth 53k
5,317 results • Page 5 of 107
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