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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
0
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1
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
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447
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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Gordon Smyth 50k
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447
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
6 weeks ago Gordon Smyth 50k
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0
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
1
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2
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
1
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1
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
0
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412
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Comment: Comment: Differing results from plotMDS and PCAtools
6 weeks ago Gordon Smyth 50k
3
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2
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
6 weeks ago Gordon Smyth 50k
1
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0
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412
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Comment: Comment: Differing results from plotMDS and PCAtools
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
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370
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
7 weeks ago Gordon Smyth 50k
2
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2.0k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
7 weeks ago • updated 5 weeks ago Gordon Smyth 50k
0
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1
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370
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
7 weeks ago Gordon Smyth 50k
2
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1
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412
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Answer: Answer: Differing results from plotMDS and PCAtools
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
2
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0
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734
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
7 weeks ago Gordon Smyth 50k
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559
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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago Gordon Smyth 50k
1
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0
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484
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Comment: Comment: DEG Filtering
7 weeks ago Gordon Smyth 50k
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1
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559
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Answer: Answer: Microarray Limma Model fitting and DEG
7 weeks ago Gordon Smyth 50k
0
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985
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Comment: Comment: limma models out of memory issue on Slurm HPC
7 weeks ago Gordon Smyth 50k
2
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1
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985
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Answer: Answer: limma models out of memory issue on Slurm HPC
7 weeks ago • updated 6 weeks ago Gordon Smyth 50k
2
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479
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Comment: Comment: Batch Effect Correction, Gene Filtering
7 weeks ago Gordon Smyth 50k
1
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0
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479
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Comment: Comment: Batch Effect Correction, Gene Filtering
7 weeks ago Gordon Smyth 50k
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250
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
8 weeks ago Gordon Smyth 50k
2
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1
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734
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
8 weeks ago Gordon Smyth 50k
1
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1
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484
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Comment: Comment: DEG Filtering
8 weeks ago • updated 7 weeks ago Gordon Smyth 50k
1
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1
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484
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Comment: Comment: DEG Filtering
8 weeks ago Gordon Smyth 50k
1
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0
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309
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
8 weeks ago Gordon Smyth 50k
1
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1
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309
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
8 weeks ago Gordon Smyth 50k
1
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1
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554
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Comment: Comment: limma: vooma mean-variance trend and data filtration
8 weeks ago Gordon Smyth 50k
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195
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
8 weeks ago Gordon Smyth 50k
2
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1
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484
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Answer: Answer: DEG Filtering
8 weeks ago Gordon Smyth 50k
0
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0
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305
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Answer: Answer: RNAseq analysis
8 weeks ago Gordon Smyth 50k
1
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1
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273
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Answer: Answer: between lane normalization upper quantile
9 weeks ago Gordon Smyth 50k
2
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1
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288
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
9 weeks ago Gordon Smyth 50k
0
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458
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Answer: Answer: DESeq2 filtering vs edgeR filtering
9 weeks ago Gordon Smyth 50k
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554
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Comment: Comment: limma: vooma mean-variance trend and data filtration
9 weeks ago Gordon Smyth 50k
1
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0
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438
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
10 weeks ago • updated 9 weeks ago Gordon Smyth 50k
0
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554
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Answer: Answer: limma: vooma mean-variance trend and data filtration
10 weeks ago Gordon Smyth 50k
0
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540
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Comment: Comment: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
2
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1
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540
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Answer: Answer: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
0
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0
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317
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Comment: Comment: Differential enrichment analysis
10 weeks ago Gordon Smyth 50k
1
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0
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504
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
10 weeks ago Gordon Smyth 50k
1
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1
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540
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Comment: Comment: Constrast for Time Course Experiments using Limma
10 weeks ago Gordon Smyth 50k
0
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0
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779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
0
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1
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504
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
10 weeks ago Gordon Smyth 50k
0
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1
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779
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Comment: Comment: Strange logFC values in differential methylation site anslysis
10 weeks ago Gordon Smyth 50k
5,094 results • Page 2 of 102
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