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Answer: Answer: Error in featureCounts matrix
11 weeks ago Gordon Smyth 50k
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525
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Answer: Answer: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
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589
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Answer: Answer: limma fo continous variables
12 weeks ago Gordon Smyth 50k
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317
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Answer: Answer: limma model matrix questions
12 weeks ago Gordon Smyth 50k
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345
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Answer: Answer: Limma with replicates at different time points
3 months ago Gordon Smyth 50k
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229
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Answer: Answer: Main effect on multiple comparisons in limma
3 months ago • updated 12 weeks ago Gordon Smyth 50k
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437
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Answer: Answer: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago • updated 12 weeks ago Gordon Smyth 50k
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425
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Answer: Answer: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
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319
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Answer: Answer: Normalization factors when there is a possible unidirectional expression
3 months ago Gordon Smyth 50k
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678
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Answer: Answer: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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384
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Answer: Answer: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
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494
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Answer: Answer: How does one test for interactions in EdgeR?
3 months ago Gordon Smyth 50k
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393
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Answer: Answer: limma with interaction term
3 months ago Gordon Smyth 50k
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316
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Answer: Answer: Design matrix after RUVg correction
3 months ago Gordon Smyth 50k
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347
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
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365
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Answer: Answer: Nested paired design
3 months ago Gordon Smyth 50k
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349
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Answer: Answer: How to get normalized values for methylation counts in edgeR
3 months ago Gordon Smyth 50k
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305
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Answer: Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
3 months ago Gordon Smyth 50k
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438
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Answer: Answer: limma design model for categorical variable
3 months ago Gordon Smyth 50k
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377
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Answer: Answer: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
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295
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Answer: Answer: Pairwise analysis of DESeq result and limma result
3 months ago Gordon Smyth 50k
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460
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Answer: Answer: goseq, warning and strange plot from nullp
3 months ago Gordon Smyth 50k
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1.1k
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Answer: Answer: Packages don't update, but no error or warning is thrown
3 months ago Gordon Smyth 50k
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381
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
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471
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Answer: Answer: Adjusting featureCounts settings in Galaxy for miRNA overlaps
3 months ago Gordon Smyth 50k
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328
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Answer: Answer: Using limma for controlling age variable
3 months ago Gordon Smyth 50k
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298
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Answer: Answer: Question about DMRcate
3 months ago Gordon Smyth 50k
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778
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Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Gordon Smyth 50k
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2
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571
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Answer: Answer: edgeR error "Design matrix not of full rank"
3 months ago Gordon Smyth 50k
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288
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Answer: Answer: Problems with Feature counting
3 months ago Gordon Smyth 50k
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1
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645
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Answer: Answer: Does EdgeR trimmed mean of M values (TMM) account for gene length?
3 months ago Gordon Smyth 50k
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597
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Answer: Answer: Monotonic genes in results of differential gene expression analysis
3 months ago Gordon Smyth 50k
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378
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Answer: Answer: EdgeR for methylation analysis when there is no replicates
3 months ago Gordon Smyth 50k
2
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709
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Answer: Answer: EdgeR: Should I include all samples/conditions in my dispersion estimation while
4 months ago Gordon Smyth 50k
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639
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Answer: Answer: filtering lowly expressed reads
4 months ago Gordon Smyth 50k
3
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327
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Answer: Answer: Dataset imbalance
4 months ago Gordon Smyth 50k
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1.1k
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Answer: Answer: RNAseq paired-sample differantial expression analysis with many samples
4 months ago Gordon Smyth 50k
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324
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Answer: Answer: download problem
4 months ago Gordon Smyth 50k
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346
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Answer: Answer: Group comparison with one sample
4 months ago Gordon Smyth 50k
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641
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Answer: Answer: Help with model for differential expression analysis
4 months ago Gordon Smyth 50k
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493
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Answer: Answer: How to perform longitudinal analysis using EdgeR
4 months ago Gordon Smyth 50k
2
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0
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312
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Answer: Answer: removeBatchEffect with non-linear model fit
5 months ago Gordon Smyth 50k
2
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677
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Answer: Answer: Correct the batch effect in methylation analysis in R
5 months ago Gordon Smyth 50k
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429
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Answer: Answer: Agilent Microarray Gene Oncology analysis gone wrong
5 months ago Gordon Smyth 50k
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0
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473
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Answer: Answer: Assess fit of variance prior
5 months ago Gordon Smyth 50k
3
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599
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Answer: Answer: Filter genes by expression for voomLmFit
5 months ago Gordon Smyth 50k
1
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1
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468
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Answer: Answer: RNASeq time course analysis, missing time points for control
5 months ago Gordon Smyth 50k
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456
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Answer: Answer: EdgeR: Exact test and glmQLFTest produce very different results
5 months ago Gordon Smyth 50k
2
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557
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Answer: Answer: Is it appropriate to apply linear mixed models to Voom transformed data?
5 months ago Gordon Smyth 50k
2
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1
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641
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Answer: Answer: limma + voom combine voomWithQualityWeights and duplicateCorrelation
6 months ago Gordon Smyth 50k
2,679 results • Page 2 of 54
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