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Comment: Comment: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
5 weeks ago Gordon Smyth 50k
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Answer: Answer: Adjust RNA-seq counts (more than one batch variable) for plotting differentially
5 weeks ago Gordon Smyth 50k
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
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390
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Comment: Comment: Differing results from plotMDS and PCAtools
5 weeks ago Gordon Smyth 50k
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2.0k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago Gordon Smyth 50k
1
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0
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390
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Comment: Comment: Differing results from plotMDS and PCAtools
5 weeks ago Gordon Smyth 50k
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357
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
5 weeks ago Gordon Smyth 50k
2
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2.0k
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Answer: Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
5 weeks ago • updated 4 weeks ago Gordon Smyth 50k
0
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1
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357
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Answer: Answer: Doing comparison of RNA-seq data using EdgeR
5 weeks ago Gordon Smyth 50k
2
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1
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390
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Answer: Answer: Differing results from plotMDS and PCAtools
5 weeks ago Gordon Smyth 50k
2
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0
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714
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
5 weeks ago Gordon Smyth 50k
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543
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Answer: Answer: Microarray Limma Model fitting and DEG
5 weeks ago Gordon Smyth 50k
1
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0
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461
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Comment: Comment: DEG Filtering
5 weeks ago Gordon Smyth 50k
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543
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Answer: Answer: Microarray Limma Model fitting and DEG
5 weeks ago Gordon Smyth 50k
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939
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Comment: Comment: limma models out of memory issue on Slurm HPC
6 weeks ago Gordon Smyth 50k
2
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939
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Answer: Answer: limma models out of memory issue on Slurm HPC
6 weeks ago • updated 4 weeks ago Gordon Smyth 50k
2
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459
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Comment: Comment: Batch Effect Correction, Gene Filtering
6 weeks ago Gordon Smyth 50k
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459
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Comment: Comment: Batch Effect Correction, Gene Filtering
6 weeks ago Gordon Smyth 50k
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236
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Answer: Answer: Using splicing junction counts with edgeR/limma-voom
6 weeks ago Gordon Smyth 50k
2
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1
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714
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Answer: Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
6 weeks ago Gordon Smyth 50k
1
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1
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461
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Comment: Comment: DEG Filtering
6 weeks ago Gordon Smyth 50k
1
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1
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461
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Comment: Comment: DEG Filtering
7 weeks ago Gordon Smyth 50k
1
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297
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Comment: Comment: edgeR, 3 x 2 design with a batch effect and contrasts
7 weeks ago Gordon Smyth 50k
1
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297
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Answer: Answer: edgeR, 3 x 2 design with a batch effect and contrasts
7 weeks ago Gordon Smyth 50k
1
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492
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Comment: Comment: limma: vooma mean-variance trend and data filtration
7 weeks ago Gordon Smyth 50k
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185
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Comment: Comment: Rsubread: buildindex() should support multiple reference files
7 weeks ago Gordon Smyth 50k
2
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461
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Answer: Answer: DEG Filtering
7 weeks ago Gordon Smyth 50k
0
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285
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Answer: Answer: RNAseq analysis
7 weeks ago Gordon Smyth 50k
1
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257
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Answer: Answer: between lane normalization upper quantile
7 weeks ago Gordon Smyth 50k
2
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1
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266
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Answer: Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
7 weeks ago Gordon Smyth 50k
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1
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439
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Answer: Answer: DESeq2 filtering vs edgeR filtering
7 weeks ago Gordon Smyth 50k
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492
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Comment: Comment: limma: vooma mean-variance trend and data filtration
8 weeks ago Gordon Smyth 50k
1
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411
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Answer: Answer: Cross-species analysis - how to compute the mid parent value?
8 weeks ago Gordon Smyth 50k
0
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492
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Answer: Answer: limma: vooma mean-variance trend and data filtration
8 weeks ago Gordon Smyth 50k
0
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1
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519
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
2
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1
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519
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Answer: Answer: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
0
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0
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293
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Comment: Comment: Differential enrichment analysis
8 weeks ago Gordon Smyth 50k
1
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0
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435
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Answer: Answer: Right way to pseudobulk donors across replicates in edgeR
8 weeks ago Gordon Smyth 50k
1
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1
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519
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Comment: Comment: Constrast for Time Course Experiments using Limma
8 weeks ago Gordon Smyth 50k
0
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0
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743
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
0
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1
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435
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Comment: Comment: Right way to pseudobulk donors across replicates in edgeR
9 weeks ago Gordon Smyth 50k
0
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1
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743
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
0
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1
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743
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
0
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0
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223
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
9 weeks ago Gordon Smyth 50k
0
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0
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743
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Comment: Comment: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
0
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1
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743
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Answer: Answer: Strange logFC values in differential methylation site anslysis
9 weeks ago Gordon Smyth 50k
2
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0
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463
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Answer: Answer: DGE analysis with LIMMA
9 weeks ago Gordon Smyth 50k
0
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0
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258
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Answer: Answer: ExactTest vs QLFTest
9 weeks ago Gordon Smyth 50k
5,088 results • Page 2 of 102
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