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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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243
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Answer: Answer: Different results from DGE using different subgroups in model.matrix
11 weeks ago • updated 10 weeks ago Gordon Smyth 50k
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797
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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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1
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797
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Answer: Answer: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
2
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505
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Answer: Answer: DGE analysis with LIMMA
11 weeks ago Gordon Smyth 50k
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288
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Answer: Answer: ExactTest vs QLFTest
11 weeks ago Gordon Smyth 50k
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327
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Comment: Comment: Interactions in batches of varying size with different number of replicates usin
11 weeks ago Gordon Smyth 50k
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327
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Comment: Comment: Interactions in batches of varying size with different levels of replicates usin
11 weeks ago Gordon Smyth 50k
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325
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Answer: Answer: Differential enrichment analysis
11 weeks ago Gordon Smyth 50k
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797
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Comment: Comment: Strange logFC values in differential methylation site anslysis
11 weeks ago Gordon Smyth 50k
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346
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Answer: Answer: Error in featureCounts matrix
11 weeks ago Gordon Smyth 50k
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528
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Comment: Comment: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
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528
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Comment: Comment: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
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528
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Answer: Answer: Library size normalization in methylation count analysis
11 weeks ago Gordon Smyth 50k
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2
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593
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Comment: Comment: limma fo continous variables
12 weeks ago Gordon Smyth 50k
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593
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Comment: Comment: limma fo continous variables
12 weeks ago Gordon Smyth 50k
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593
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Answer: Answer: limma fo continous variables
12 weeks ago Gordon Smyth 50k
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322
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Answer: Answer: limma model matrix questions
3 months ago Gordon Smyth 50k
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444
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
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349
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Answer: Answer: Limma with replicates at different time points
3 months ago Gordon Smyth 50k
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0
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231
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Answer: Answer: Main effect on multiple comparisons in limma
3 months ago Gordon Smyth 50k
3
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431
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Comment: Comment: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
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444
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Answer: Answer: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
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444
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Comment: Comment: edgeR: DEGs in a CRD factorial (2x2x2)
3 months ago Gordon Smyth 50k
2
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431
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Answer: Answer: Confusion about LFC using contrasts weights in EdgeR
3 months ago Gordon Smyth 50k
2
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0
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321
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Answer: Answer: Normalization factors when there is a possible unidirectional expression
3 months ago Gordon Smyth 50k
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688
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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688
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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688
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Answer: Answer: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
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688
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Comment: Comment: Divergent results using exact, glmLRT, and glmQLF tests in edgeR
3 months ago Gordon Smyth 50k
0
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0
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390
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Comment: Comment: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
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390
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Answer: Answer: CAMERA + Gene Ontology Gene Sets
3 months ago Gordon Smyth 50k
3
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505
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Answer: Answer: How does one test for interactions in EdgeR?
3 months ago Gordon Smyth 50k
0
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0
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396
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Answer: Answer: limma with interaction term
3 months ago Gordon Smyth 50k
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396
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Comment: Comment: limma with interaction term
3 months ago Gordon Smyth 50k
0
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0
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646
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Comment: Comment: filtering lowly expressed reads
3 months ago Gordon Smyth 50k
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367
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Comment: Comment: Nested paired design
3 months ago Gordon Smyth 50k
3
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320
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Answer: Answer: Design matrix after RUVg correction
3 months ago Gordon Smyth 50k
2
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352
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Answer: Answer: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
0
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0
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352
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Comment: Comment: Longitudinal analysis in Limma
3 months ago Gordon Smyth 50k
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1
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367
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Answer: Answer: Nested paired design
3 months ago Gordon Smyth 50k
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353
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Answer: Answer: How to get normalized values for methylation counts in edgeR
3 months ago Gordon Smyth 50k
1
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445
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Comment: Comment: limma design model for categorical variable
3 months ago Gordon Smyth 50k
2
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1
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306
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Answer: Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
3 months ago Gordon Smyth 50k
0
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445
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Answer: Answer: limma design model for categorical variable
3 months ago Gordon Smyth 50k
2
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0
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383
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Comment: Comment: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
2
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1
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383
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Answer: Answer: voom with quality weights after RUV correction
3 months ago Gordon Smyth 50k
0
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302
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Answer: Answer: Pairwise analysis of DESeq result and limma result
3 months ago Gordon Smyth 50k
1
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0
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6.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3 months ago Gordon Smyth 50k
5,095 results • Page 3 of 102
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