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Answer: Answer: Cluster profiler emap plot - what are the annotations?
8 months ago Guido Hooiveld ★ 4.0k
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1
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1.2k
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Answer: Answer: apply clusterProfiler::simplify on merge_result list
8 months ago Guido Hooiveld ★ 4.0k
2
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1
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451
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Answer: Answer: Broken UNITE 9.0 link (General FASTA Release)
8 months ago Guido Hooiveld ★ 4.0k
1
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0
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1.1k
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Comment: Comment: ERROR in EnrichKEGG(), 'species should be listed' in, download method do not cha
9 months ago Guido Hooiveld ★ 4.0k
1
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1
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1.1k
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Comment: Comment: pathview - a species in KEGG pathway but not in 'korg'
11 months ago Guido Hooiveld ★ 4.0k
1
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1
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520
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Answer: Answer: Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
11 months ago Guido Hooiveld ★ 4.0k
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0
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4.8k
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Comment: Comment: Genelist input for ClusterProfiler
11 months ago Guido Hooiveld ★ 4.0k
1
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1
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5.7k
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Comment: Comment: Ensembl plants at annotationHub?
11 months ago Guido Hooiveld ★ 4.0k
0
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1
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1.1k
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Comment: Comment: enhanced volcano , different -log10pvalue of the same gene
12 months ago Guido Hooiveld ★ 4.0k
0
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
12 months ago Guido Hooiveld ★ 4.0k
1
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
12 months ago Guido Hooiveld ★ 4.0k
1
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
12 months ago Guido Hooiveld ★ 4.0k
0
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1
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1.4k
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Comment: Comment: enrichKEGG function error
13 months ago Guido Hooiveld ★ 4.0k
0
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1
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1.4k
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Answer: Answer: enrichKEGG function error
13 months ago Guido Hooiveld ★ 4.0k
1
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0
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1.3k
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Answer: Answer: Error with Pathview: Bad Request (HTTP 400)
13 months ago Guido Hooiveld ★ 4.0k
0
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1
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921
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Comment: Comment: Unable to install BiocManager
13 months ago Guido Hooiveld ★ 4.0k
0
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0
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1.1k
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Comment: Comment: how to add an enrichment score to a kegg pathway enrichment analysis?
13 months ago Guido Hooiveld ★ 4.0k
0
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0
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398
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Answer: Answer: Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
13 months ago Guido Hooiveld ★ 4.0k
1
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1
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1.1k
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Comment: Comment: how to add an enrichment score to a kegg pathway enrichment analysis?
13 months ago Guido Hooiveld ★ 4.0k
1
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0
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1.4k
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Comment: Comment: Failed to install Biobase
13 months ago Guido Hooiveld ★ 4.0k
0
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1
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1.3k
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Answer: Answer: pathview: Warning: Failed to download KEGG xml/png files, hsa04110 skipped!
13 months ago Guido Hooiveld ★ 4.0k
0
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1
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5.0k
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Comment: Comment: KEGG enrichment in R and gene IDs
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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5.0k
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Comment: Comment: KEGG enrichment in R and gene IDs
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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5.0k
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Comment: Comment: KEGG enrichment in R and gene IDs
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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5.0k
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Comment: Comment: KEGG enrichment in R and gene IDs
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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5.0k
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Answer: Answer: KEGG enrichment in R and gene IDs
14 months ago Guido Hooiveld ★ 4.0k
0
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0
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1.2k
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Comment: Comment: Am I able to add gene names/symbols to an enrichGO() output?
14 months ago Guido Hooiveld ★ 4.0k
0
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0
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4.0k
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Comment: Comment: Reduce the number of nodes appear in the cnetplot of clusterprofiler
14 months ago Guido Hooiveld ★ 4.0k
0
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0
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4.0k
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Comment: Comment: Reduce the number of nodes appear in the cnetplot of clusterprofiler
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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4.0k
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Answer: Answer: Reduce the number of nodes appear in the cnetplot of clusterprofiler
14 months ago Guido Hooiveld ★ 4.0k
1
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0
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4.5k
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Comment: Comment: gseKEGG - no gene can be mapped (RNAseq analysis)
14 months ago Guido Hooiveld ★ 4.0k
0
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0
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1.9k
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Comment: Comment: Problem with universe argument in enrichKEGG
14 months ago Guido Hooiveld ★ 4.0k
0
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1
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2.0k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
14 months ago Guido Hooiveld ★ 4.0k
1
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1
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2.0k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
14 months ago Guido Hooiveld ★ 4.0k
1
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0
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1.1k
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Comment: Comment: Is ther an annotation package for sheep (Ovis aries)
15 months ago Guido Hooiveld ★ 4.0k
0
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1
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2.3k
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Comment: Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
15 months ago Guido Hooiveld ★ 4.0k
0
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2
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1.3k
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Comment: Comment: mas5calls function doesn't work; mirna40cdf problem
15 months ago Guido Hooiveld ★ 4.0k
0
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1
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2.6k
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Comment: Comment: pathview says my nonmodel species is unknown: "species invalid"
15 months ago Guido Hooiveld ★ 4.0k
1
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1
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1.1k
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Answer: Answer: Is ther an annotation package for sheep (Ovis aries)
15 months ago Guido Hooiveld ★ 4.0k
1
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1
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2.2k
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Comment: Comment: MA plot
15 months ago Guido Hooiveld ★ 4.0k
3
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0
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2.2k
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Comment: Comment: MA plot
15 months ago Guido Hooiveld ★ 4.0k
2
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1
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2.2k
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Comment: Comment: MA plot
15 months ago Guido Hooiveld ★ 4.0k
1
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1
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647
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Answer: Answer: select with org.Mm.eg.db does not give ENSEMBL ids
16 months ago Guido Hooiveld ★ 4.0k
0
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0
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2.1k
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Comment: Comment: How can I limit the number of displayed genes in heatplot
16 months ago Guido Hooiveld ★ 4.0k
0
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1
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2.2k
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Answer: Answer: clusterProfiler - custom annotations
17 months ago Guido Hooiveld ★ 4.0k
0
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2
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2.1k
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Comment: Comment: How can I limit the number of displayed gene sin heatplot
17 months ago Guido Hooiveld ★ 4.0k
0
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0
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835
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Comment: Comment: DGE genes are not available in GSEA
17 months ago Guido Hooiveld ★ 4.0k
0
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0
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3.6k
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Comment: Comment: Error in UseMethod("rescale")
17 months ago Guido Hooiveld ★ 4.0k
1
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1
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2.2k
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Comment: Comment: Implementation of the "original" GSEA algorithm in R
17 months ago Guido Hooiveld ★ 4.0k
0
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1
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3.3k
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Comment: Comment: KEGG enrichment analysis for non model organism
17 months ago Guido Hooiveld ★ 4.0k
686 results • Page 2 of 14
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