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Answer: Answer: OrgDb for maize
19 minutes ago • updated 12 minutes ago Guido Hooiveld ★ 3.9k
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108
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Comment: Comment: compareCluster dotplot: how to modify the genesets order
4 days ago Guido Hooiveld ★ 3.9k
2
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1
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142
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Answer: Answer: How many of my genes from my gene list are in each KEGG pathway?
6 days ago Guido Hooiveld ★ 3.9k
7
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36
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5.5k
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Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 14 days ago by • 0 • written 5.4 years ago by ★ 3.9k
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0
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173
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Comment: Comment: Help with identifying genes mapped to KEGG pathway using pathview
23 days ago Guido Hooiveld ★ 3.9k
0
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1
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302
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Answer: Answer: The order of those tied genes will be arbitrary, which may produce unexpected re
25 days ago Guido Hooiveld ★ 3.9k
1
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0
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174
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Comment: Comment: Only positive enrichment score in GSEA
25 days ago Guido Hooiveld ★ 3.9k
0
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0
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1.3k
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Answer: Answer: enrichGOgradient color change
4 weeks ago Guido Hooiveld ★ 3.9k
0
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0
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229
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Comment: Comment: Error in enrichKEGG for a model organism
8 weeks ago Guido Hooiveld ★ 3.9k
1
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0
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893
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Comment: Comment: Error MakeOrgPackagefromNCBI
10 weeks ago Guido Hooiveld ★ 3.9k
0
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1
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893
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Comment: Comment: Error MakeOrgPackagefromNCBI
10 weeks ago Guido Hooiveld ★ 3.9k
0
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1
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286
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Answer: Answer: Problem with buildGOmap from clusterProfiler
10 weeks ago Guido Hooiveld ★ 3.9k
0
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1
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926
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
10 weeks ago Guido Hooiveld ★ 3.9k
1
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1
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926
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
11 weeks ago Guido Hooiveld ★ 3.9k
1
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1
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926
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Comment: Comment: Looking for documentation about the use of "split = .sign" in enrichplot's dotpl
11 weeks ago Guido Hooiveld ★ 3.9k
1
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0
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332
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Comment: Comment: Enrichement with clusterProfiler and biomart
3 months ago Guido Hooiveld ★ 3.9k
1
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1
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593
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Comment: Comment: Access genes associated with GO terms for a topGO object created with gene2GO
3 months ago Guido Hooiveld ★ 3.9k
0
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0
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8.6k
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Comment: Comment: No gene can be mapped error with clusterprofiler
3 months ago Guido Hooiveld ★ 3.9k
0
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0
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2.0k
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Comment: Comment: clusterProfiler - custom annotations
3 months ago Guido Hooiveld ★ 3.9k
1
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0
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1.9k
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Comment: Comment: clusterProfiler for KEGG enrichment (non-model species) Over-Representation Anal
3 months ago Guido Hooiveld ★ 3.9k
0
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0
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4.9k
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Comment: Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
4 months ago Guido Hooiveld ★ 3.9k
0
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0
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356
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Comment: Comment: Error Oligo package asking for pd.2.0 package annotation
4 months ago Guido Hooiveld ★ 3.9k
0
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1
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356
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Answer: Answer: Error Oligo package asking for pd.2.0 package annotation
4 months ago Guido Hooiveld ★ 3.9k
0
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0
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753
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
4 months ago Guido Hooiveld ★ 3.9k
0
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1
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753
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Comment: Comment: How can we use the organism database created by makeorgPackageFromNCBI to KEGG a
4 months ago Guido Hooiveld ★ 3.9k
0
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0
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599
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
4 months ago Guido Hooiveld ★ 3.9k
0
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1
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599
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
4 months ago Guido Hooiveld ★ 3.9k
0
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1
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599
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
4 months ago Guido Hooiveld ★ 3.9k
0
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2
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599
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Comment: Comment: It's possible to use clusterProfiler without an annotationDBI package
4 months ago Guido Hooiveld ★ 3.9k
0
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1
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599
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Answer: Answer: It's possible to use clusterProfiler without an annotationDBI package
4 months ago Guido Hooiveld ★ 3.9k
1
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0
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1.1k
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Comment: Comment: Annotation hub and clusterProfiler errors
5 months ago Guido Hooiveld ★ 3.9k
0
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0
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685
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Comment: Comment: Important Bioconductor Release 3.18 deadlines this week
6 months ago Guido Hooiveld ★ 3.9k
1
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1
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737
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Comment: Comment: Help with orgdb for non-model species via makeOrgPackageFromNCBI
6 months ago Guido Hooiveld ★ 3.9k
0
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0
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3.0k
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Comment: Comment: NCBI Locus ID to gene ID conversion
6 months ago Guido Hooiveld ★ 3.9k
0
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0
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1.1k
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Comment: Comment: pathview error "negative length vectors are not allowed
6 months ago Guido Hooiveld ★ 3.9k
0
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1
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1.1k
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Comment: Comment: pathview error "negative length vectors are not allowed
6 months ago Guido Hooiveld ★ 3.9k
0
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1
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711
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Comment: Comment: Why do I obtain Identical Adj.P value when running edgeR ?
7 months ago Guido Hooiveld ★ 3.9k
1
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1
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807
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Answer: Answer: Cluster profiler emap plot - what are the annotations?
7 months ago Guido Hooiveld ★ 3.9k
0
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1
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1.1k
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Answer: Answer: apply clusterProfiler::simplify on merge_result list
7 months ago Guido Hooiveld ★ 3.9k
2
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1
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418
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Answer: Answer: Broken UNITE 9.0 link (General FASTA Release)
8 months ago Guido Hooiveld ★ 3.9k
1
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0
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1.0k
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Comment: Comment: ERROR in EnrichKEGG(), 'species should be listed' in, download method do not cha
8 months ago Guido Hooiveld ★ 3.9k
1
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1
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1.0k
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Comment: Comment: pathview - a species in KEGG pathway but not in 'korg'
10 months ago Guido Hooiveld ★ 3.9k
1
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1
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472
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Answer: Answer: Affymetrix analysis Chiptype hgu133plus2hsentrezg.db vs hgu133plus2.db
10 months ago Guido Hooiveld ★ 3.9k
0
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0
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4.6k
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Comment: Comment: Genelist input for ClusterProfiler
10 months ago Guido Hooiveld ★ 3.9k
1
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1
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5.5k
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Comment: Comment: Ensembl plants at annotationHub?
10 months ago Guido Hooiveld ★ 3.9k
0
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1
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1.0k
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Comment: Comment: enhanced volcano , different -log10pvalue of the same gene
11 months ago Guido Hooiveld ★ 3.9k
0
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
11 months ago Guido Hooiveld ★ 3.9k
1
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
11 months ago Guido Hooiveld ★ 3.9k
1
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1
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1.1k
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Comment: Comment: failed to use tximport for creating count matrix from kallisto
11 months ago Guido Hooiveld ★ 3.9k
0
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1
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1.3k
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Comment: Comment: enrichKEGG function error
12 months ago Guido Hooiveld ★ 3.9k
673 results • Page 1 of 14
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