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Comment: Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
26 days ago Wei Shi ★ 3.6k
1
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0
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256
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Comment: Comment: Rsubread crashes Rstudio while alignment
5 weeks ago Wei Shi ★ 3.6k
1
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1
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256
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Answer: Answer: Rsubread crashes Rstudio while alignment
5 weeks ago Wei Shi ★ 3.6k
1
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0
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267
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Answer: Answer: featureCounts unable to assign long reads to one specific isoform
8 weeks ago Wei Shi ★ 3.6k
2
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1
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752
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Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Wei Shi ★ 3.6k
2
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1
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592
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Answer: Answer: Long-read mode in featureCounts
6 months ago Wei Shi ★ 3.6k
0
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0
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608
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Comment: Comment: R session aborts after running align function on Rsubread
8 months ago Wei Shi ★ 3.6k
1
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0
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687
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Answer: Answer: Rsubread: subjunc() loads index repeatedly
9 months ago Wei Shi ★ 3.6k
0
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0
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868
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Answer: Answer: Potential segfault bug in featureCounts using long read data
12 months ago Wei Shi ★ 3.6k
1
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1
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1.7k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
14 months ago Wei Shi ★ 3.6k
0
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0
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1.7k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
14 months ago Wei Shi ★ 3.6k
0
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1
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1.7k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
14 months ago Wei Shi ★ 3.6k
0
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0
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860
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Answer: Answer: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
14 months ago Wei Shi ★ 3.6k
1
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1
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1.6k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
14 months ago Wei Shi ★ 3.6k
0
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0
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860
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Comment: Comment: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
15 months ago Wei Shi ★ 3.6k
0
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1
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838
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Comment: Comment: Rsubread align --R session aborts
21 months ago Wei Shi ★ 3.6k
3
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1
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3.6k
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Answer: Answer: cellCounts() function floating point error
21 months ago Wei Shi ★ 3.6k
1
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1
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3.6k
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Comment: Comment: cellCounts() function floating point error
21 months ago Wei Shi ★ 3.6k
0
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0
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742
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Comment: Comment: fetaure counts err
21 months ago Wei Shi ★ 3.6k
1
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1
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3.6k
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Comment: Comment: cellCounts() function floating point error
21 months ago Wei Shi ★ 3.6k
1
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1
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3.6k
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Comment: Comment: cellCounts() function floating point error
22 months ago Wei Shi ★ 3.6k
2
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1
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3.6k
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Answer: Answer: cellCounts() function floating point error
22 months ago Wei Shi ★ 3.6k
1
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1
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3.6k
views
Comment: Comment: cellCounts() function floating point error
24 months ago Wei Shi ★ 3.6k
1
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1
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3.6k
views
Comment: Comment: cellCounts() function floating point error
24 months ago Wei Shi ★ 3.6k
0
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1
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3.6k
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Comment: Comment: cellCounts() function floating point error
24 months ago Wei Shi ★ 3.6k
1
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1
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1.4k
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Comment: Comment: Case Studies Data Missing in Rsubread
2.0 years ago Wei Shi ★ 3.6k
0
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1
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1.4k
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Answer: Answer: Case Studies Data Missing in Rsubread
2.0 years ago Wei Shi ★ 3.6k
1
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2
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3.6k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
2.0 years ago Wei Shi ★ 3.6k
0
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1
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3.6k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
2.0 years ago Wei Shi ★ 3.6k
0
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1
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1.4k
views
Comment: Comment: Annotated file with gene ID (instead of gene symbol)
2.0 years ago Wei Shi ★ 3.6k
0
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0
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2.9k
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Comment: Comment: Unassigned reads in Rsubread FeatureCounts
2.0 years ago Wei Shi ★ 3.6k
0
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1
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3.6k
views
Comment: Comment: The low successful assignment ratio of FeatureCounts
2.0 years ago Wei Shi ★ 3.6k
1
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1
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3.9k
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Comment: Comment: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
2.1 years ago Wei Shi ★ 3.6k
0
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0
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2.0k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Wei Shi ★ 3.6k
1
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2
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2.0k
views
Answer: Answer: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Wei Shi ★ 3.6k
0
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0
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855
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Comment: Comment: Mapping RNA-seq reads - subjunc and align functions
2.5 years ago Wei Shi ★ 3.6k
1
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0
replies
1.2k
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Comment: Comment: Make featureCounts ignore soft clip and insertions when for calculating read ove
2.7 years ago Wei Shi ★ 3.6k
0
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0
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18k
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Comment: Comment: featureCounts - paired-end data
2.8 years ago Wei Shi ★ 3.6k
0
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2
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18k
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Comment: Comment: featureCounts - paired-end data
2.8 years ago Wei Shi ★ 3.6k
0
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0
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4.7k
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Comment: Comment: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
2.8 years ago Wei Shi ★ 3.6k
0
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0
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1.8k
views
Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
3.1 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
views
Comment: Comment: Rsubread ComplexIndels
3.2 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
views
Answer: Answer: Rsubread ComplexIndels
3.2 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
views
Comment: Comment: Rsubread ComplexIndels
3.2 years ago Wei Shi ★ 3.6k
0
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1
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6.2k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3.4 years ago Wei Shi ★ 3.6k
0
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1
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1.7k
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Answer: Answer: Rsubread unable to return alignments
3.4 years ago Wei Shi ★ 3.6k
1
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1
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1.6k
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Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
3.9 years ago Wei Shi ★ 3.6k
2
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0
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1.6k
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Answer: A: Rsubread: change in behavior when accepting mixed paired end and single end file
3.9 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
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Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
3.9 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
views
Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
3.9 years ago Wei Shi ★ 3.6k
444 results • Page 1 of 9
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