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0
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783
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
9 weeks ago Wei Shi ★ 3.6k
0
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1
reply
696
views
Comment: Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
3 months ago Wei Shi ★ 3.6k
1
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0
replies
365
views
Comment: Comment: Rsubread crashes Rstudio while alignment
4 months ago Wei Shi ★ 3.6k
1
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1
reply
365
views
Answer: Answer: Rsubread crashes Rstudio while alignment
4 months ago Wei Shi ★ 3.6k
1
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0
replies
413
views
Answer: Answer: featureCounts unable to assign long reads to one specific isoform
4 months ago Wei Shi ★ 3.6k
2
votes
1
reply
885
views
Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
5 months ago Wei Shi ★ 3.6k
2
votes
1
reply
802
views
Answer: Answer: Long-read mode in featureCounts
9 months ago Wei Shi ★ 3.6k
0
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0
replies
726
views
Comment: Comment: R session aborts after running align function on Rsubread
11 months ago Wei Shi ★ 3.6k
1
vote
0
replies
841
views
Answer: Answer: Rsubread: subjunc() loads index repeatedly
12 months ago Wei Shi ★ 3.6k
0
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0
replies
995
views
Answer: Answer: Potential segfault bug in featureCounts using long read data
14 months ago Wei Shi ★ 3.6k
1
vote
1
reply
1.9k
views
Comment: Comment: featureCounts with NCBI T2T not capturing all genes
16 months ago Wei Shi ★ 3.6k
0
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0
replies
1.9k
views
Comment: Comment: featureCounts with NCBI T2T not capturing all genes
16 months ago Wei Shi ★ 3.6k
0
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1
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1.9k
views
Comment: Comment: featureCounts with NCBI T2T not capturing all genes
16 months ago Wei Shi ★ 3.6k
0
votes
0
replies
970
views
Answer: Answer: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
17 months ago Wei Shi ★ 3.6k
1
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1
reply
1.8k
views
Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
17 months ago Wei Shi ★ 3.6k
0
votes
0
replies
970
views
Comment: Comment: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
18 months ago Wei Shi ★ 3.6k
0
votes
1
reply
910
views
Comment: Comment: Rsubread align --R session aborts
24 months ago Wei Shi ★ 3.6k
3
votes
1
reply
3.8k
views
Answer: Answer: cellCounts() function floating point error
2.0 years ago Wei Shi ★ 3.6k
1
vote
1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.0 years ago Wei Shi ★ 3.6k
0
votes
0
replies
847
views
Comment: Comment: fetaure counts err
2.0 years ago Wei Shi ★ 3.6k
1
vote
1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.0 years ago Wei Shi ★ 3.6k
1
vote
1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.1 years ago Wei Shi ★ 3.6k
2
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1
reply
3.8k
views
Answer: Answer: cellCounts() function floating point error
2.1 years ago Wei Shi ★ 3.6k
1
vote
1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.2 years ago Wei Shi ★ 3.6k
1
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1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.2 years ago Wei Shi ★ 3.6k
0
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1
reply
3.8k
views
Comment: Comment: cellCounts() function floating point error
2.2 years ago Wei Shi ★ 3.6k
1
vote
1
reply
1.5k
views
Comment: Comment: Case Studies Data Missing in Rsubread
2.2 years ago Wei Shi ★ 3.6k
0
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1
reply
1.5k
views
Answer: Answer: Case Studies Data Missing in Rsubread
2.2 years ago Wei Shi ★ 3.6k
1
vote
2
replies
4.0k
views
Comment: Comment: The low successful assignment ratio of FeatureCounts
2.2 years ago Wei Shi ★ 3.6k
0
votes
1
reply
4.0k
views
Comment: Comment: The low successful assignment ratio of FeatureCounts
2.2 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.6k
views
Comment: Comment: Annotated file with gene ID (instead of gene symbol)
2.2 years ago Wei Shi ★ 3.6k
0
votes
0
replies
3.2k
views
Comment: Comment: Unassigned reads in Rsubread FeatureCounts
2.3 years ago Wei Shi ★ 3.6k
0
votes
1
reply
4.0k
views
Comment: Comment: The low successful assignment ratio of FeatureCounts
2.3 years ago Wei Shi ★ 3.6k
1
vote
1
reply
4.1k
views
Comment: Comment: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
2.3 years ago Wei Shi ★ 3.6k
0
votes
0
replies
2.2k
views
Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.4 years ago Wei Shi ★ 3.6k
1
vote
2
replies
2.2k
views
Answer: Answer: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.4 years ago Wei Shi ★ 3.6k
0
votes
0
replies
933
views
Comment: Comment: Mapping RNA-seq reads - subjunc and align functions
2.8 years ago Wei Shi ★ 3.6k
1
vote
0
replies
1.3k
views
Comment: Comment: Make featureCounts ignore soft clip and insertions when for calculating read ove
3.0 years ago Wei Shi ★ 3.6k
0
votes
0
replies
19k
views
Comment: Comment: featureCounts - paired-end data
3.0 years ago Wei Shi ★ 3.6k
0
votes
2
replies
19k
views
Comment: Comment: featureCounts - paired-end data
3.0 years ago Wei Shi ★ 3.6k
0
votes
0
replies
5.1k
views
Comment: Comment: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
3.1 years ago Wei Shi ★ 3.6k
0
votes
0
replies
1.9k
views
Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
3.3 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.8k
views
Comment: Comment: Rsubread ComplexIndels
3.4 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.8k
views
Answer: Answer: Rsubread ComplexIndels
3.4 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.8k
views
Comment: Comment: Rsubread ComplexIndels
3.4 years ago Wei Shi ★ 3.6k
0
votes
1
reply
6.5k
views
Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
3.6 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.9k
views
Answer: Answer: Rsubread unable to return alignments
3.6 years ago Wei Shi ★ 3.6k
1
vote
1
reply
1.7k
views
Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
4.1 years ago Wei Shi ★ 3.6k
2
votes
0
replies
1.7k
views
Answer: A: Rsubread: change in behavior when accepting mixed paired end and single end file
4.1 years ago Wei Shi ★ 3.6k
0
votes
1
reply
1.7k
views
Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
4.1 years ago Wei Shi ★ 3.6k
445 results • Page 1 of 9
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