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2
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1
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858
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Answer: Answer: Feature Counts - potential bug with outfile.jcounts
5 days ago Wei Shi ★ 3.6k
0
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1
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1.3k
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Comment: Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
6 months ago Wei Shi ★ 3.6k
0
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1
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947
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Comment: Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
8 months ago Wei Shi ★ 3.6k
1
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0
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533
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Comment: Comment: Rsubread crashes Rstudio while alignment
8 months ago Wei Shi ★ 3.6k
1
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1
reply
533
views
Answer: Answer: Rsubread crashes Rstudio while alignment
8 months ago Wei Shi ★ 3.6k
1
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0
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651
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Answer: Answer: featureCounts unable to assign long reads to one specific isoform
9 months ago Wei Shi ★ 3.6k
2
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1
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1.1k
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Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
10 months ago Wei Shi ★ 3.6k
2
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1
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1.2k
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Answer: Answer: Long-read mode in featureCounts
14 months ago Wei Shi ★ 3.6k
0
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0
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884
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Comment: Comment: R session aborts after running align function on Rsubread
16 months ago Wei Shi ★ 3.6k
1
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0
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1.1k
views
Answer: Answer: Rsubread: subjunc() loads index repeatedly
17 months ago Wei Shi ★ 3.6k
0
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0
replies
1.2k
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Answer: Answer: Potential segfault bug in featureCounts using long read data
19 months ago Wei Shi ★ 3.6k
1
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1
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2.3k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
21 months ago Wei Shi ★ 3.6k
0
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0
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2.3k
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Comment: Comment: featureCounts with NCBI T2T not capturing all genes
21 months ago Wei Shi ★ 3.6k
0
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1
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2.3k
views
Comment: Comment: featureCounts with NCBI T2T not capturing all genes
21 months ago Wei Shi ★ 3.6k
0
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0
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1.1k
views
Answer: Answer: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
21 months ago Wei Shi ★ 3.6k
1
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1
reply
2.3k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
22 months ago Wei Shi ★ 3.6k
0
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0
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1.1k
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Comment: Comment: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
22 months ago Wei Shi ★ 3.6k
0
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1
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1.0k
views
Comment: Comment: Rsubread align --R session aborts
2.4 years ago Wei Shi ★ 3.6k
3
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1
reply
4.2k
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Answer: Answer: cellCounts() function floating point error
2.4 years ago Wei Shi ★ 3.6k
1
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1
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4.2k
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Comment: Comment: cellCounts() function floating point error
2.4 years ago Wei Shi ★ 3.6k
0
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0
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986
views
Comment: Comment: fetaure counts err
2.4 years ago Wei Shi ★ 3.6k
1
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1
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4.2k
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Comment: Comment: cellCounts() function floating point error
2.4 years ago Wei Shi ★ 3.6k
1
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1
reply
4.2k
views
Comment: Comment: cellCounts() function floating point error
2.5 years ago Wei Shi ★ 3.6k
2
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1
reply
4.2k
views
Answer: Answer: cellCounts() function floating point error
2.5 years ago Wei Shi ★ 3.6k
1
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1
reply
4.2k
views
Comment: Comment: cellCounts() function floating point error
2.6 years ago Wei Shi ★ 3.6k
1
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1
reply
4.2k
views
Comment: Comment: cellCounts() function floating point error
2.6 years ago Wei Shi ★ 3.6k
0
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1
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4.2k
views
Comment: Comment: cellCounts() function floating point error
2.6 years ago Wei Shi ★ 3.6k
1
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1
reply
1.6k
views
Comment: Comment: Case Studies Data Missing in Rsubread
2.6 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
views
Answer: Answer: Case Studies Data Missing in Rsubread
2.6 years ago Wei Shi ★ 3.6k
1
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2
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4.5k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
2.6 years ago Wei Shi ★ 3.6k
0
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1
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4.5k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
2.6 years ago Wei Shi ★ 3.6k
0
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1
reply
1.9k
views
Comment: Comment: Annotated file with gene ID (instead of gene symbol)
2.6 years ago Wei Shi ★ 3.6k
0
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0
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3.6k
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Comment: Comment: Unassigned reads in Rsubread FeatureCounts
2.6 years ago Wei Shi ★ 3.6k
0
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1
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4.5k
views
Comment: Comment: The low successful assignment ratio of FeatureCounts
2.6 years ago Wei Shi ★ 3.6k
1
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1
reply
4.5k
views
Comment: Comment: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
2.7 years ago Wei Shi ★ 3.6k
0
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0
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2.6k
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Comment: Comment: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.8 years ago Wei Shi ★ 3.6k
1
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2
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2.6k
views
Answer: Answer: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.8 years ago Wei Shi ★ 3.6k
0
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0
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1.1k
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Comment: Comment: Mapping RNA-seq reads - subjunc and align functions
3.1 years ago Wei Shi ★ 3.6k
1
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0
replies
1.5k
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Comment: Comment: Make featureCounts ignore soft clip and insertions when for calculating read ove
3.4 years ago Wei Shi ★ 3.6k
0
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0
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20k
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Comment: Comment: featureCounts - paired-end data
3.4 years ago Wei Shi ★ 3.6k
0
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2
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20k
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Comment: Comment: featureCounts - paired-end data
3.4 years ago Wei Shi ★ 3.6k
0
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0
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6.1k
views
Comment: Comment: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
3.5 years ago Wei Shi ★ 3.6k
0
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0
replies
2.1k
views
Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
3.7 years ago Wei Shi ★ 3.6k
0
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1
reply
2.0k
views
Comment: Comment: Rsubread ComplexIndels
3.8 years ago Wei Shi ★ 3.6k
0
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1
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2.0k
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Answer: Answer: Rsubread ComplexIndels
3.8 years ago Wei Shi ★ 3.6k
0
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1
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2.0k
views
Comment: Comment: Rsubread ComplexIndels
3.8 years ago Wei Shi ★ 3.6k
0
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1
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7.0k
views
Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
4.0 years ago Wei Shi ★ 3.6k
0
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1
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2.1k
views
Answer: Answer: Rsubread unable to return alignments
4.0 years ago Wei Shi ★ 3.6k
1
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1
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1.9k
views
Comment: C: Rsubread: change in behavior when accepting mixed paired end and single end file
4.5 years ago Wei Shi ★ 3.6k
2
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0
replies
1.9k
views
Answer: A: Rsubread: change in behavior when accepting mixed paired end and single end file
4.5 years ago Wei Shi ★ 3.6k
446 results • Page 1 of 9
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