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256
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Answer: Answer: Rsubread crashes Rstudio while alignment
5 weeks ago Wei Shi ★ 3.6k
1
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0
replies
264
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Answer: Answer: featureCounts unable to assign long reads to one specific isoform
8 weeks ago Wei Shi ★ 3.6k
2
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1
reply
751
views
Answer: Answer: [BUG] Rsubread::featureCounts quirk in CORE files: different target list orderin
3 months ago Wei Shi ★ 3.6k
2
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1
reply
590
views
Answer: Answer: Long-read mode in featureCounts
6 months ago Wei Shi ★ 3.6k
1
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0
replies
686
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Answer: Answer: Rsubread: subjunc() loads index repeatedly
9 months ago Wei Shi ★ 3.6k
0
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0
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866
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Answer: Answer: Potential segfault bug in featureCounts using long read data
12 months ago Wei Shi ★ 3.6k
0
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0
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859
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Answer: Answer: Possible bugs in Rsubread/stad-alone featureCounts options fracOverlap and large
14 months ago Wei Shi ★ 3.6k
1
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1
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1.6k
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Answer: Answer: 10x BAM to count matrix in Rsubread and Rsamtools- cellCounts vs. featureCounts
14 months ago Wei Shi ★ 3.6k
3
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1
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3.6k
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Answer: Answer: cellCounts() function floating point error
21 months ago Wei Shi ★ 3.6k
2
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1
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3.6k
views
Answer: Answer: cellCounts() function floating point error
22 months ago Wei Shi ★ 3.6k
0
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1
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1.4k
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Answer: Answer: Case Studies Data Missing in Rsubread
2.0 years ago Wei Shi ★ 3.6k
1
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2
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2.0k
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Answer: Answer: featureCounts parameter queries - minOverlap, fracOverlap, fracOverlapFeature
2.2 years ago Wei Shi ★ 3.6k
0
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1
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1.6k
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Answer: Answer: Rsubread ComplexIndels
3.2 years ago Wei Shi ★ 3.6k
0
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1
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1.7k
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Answer: Answer: Rsubread unable to return alignments
3.4 years ago Wei Shi ★ 3.6k
2
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0
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1.6k
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Answer: A: Rsubread: change in behavior when accepting mixed paired end and single end file
3.9 years ago Wei Shi ★ 3.6k
2
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1
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2.9k
views
Answer: A: Unassigned reads in Rsubread FeatureCounts
4.0 years ago Wei Shi ★ 3.6k
1
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1
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1.9k
views
Answer: A: Rsubread buildindex error
4.1 years ago Wei Shi ★ 3.6k
0
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0
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681
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Answer: A: Rsubread: using shared memory for index while aligning with forked processes
updated 4.3 years ago by 50k • written 4.3 years ago by ★ 3.6k
1
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0
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893
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Answer: A: Replicating bowtie2 alignment parameters with Rsubread
4.6 years ago Wei Shi ★ 3.6k
1
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0
replies
917
views
Answer: C: Rsubread CIGAR output M only?
4.6 years ago Wei Shi ★ 3.6k
2
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1
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2.2k
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Answer: A: "ERROR: cannot create temp file" when using buildindex from Rsubread
4.6 years ago Wei Shi ★ 3.6k
0
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0
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3.1k
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Answer: A: Collecting unmapped RNA-seq reads
4.7 years ago Wei Shi ★ 3.6k
3
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1
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2.7k
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Answer: A: the coordinates of exons of RefSeq or ENSEMBL genes
4.8 years ago Wei Shi ★ 3.6k
0
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0
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1.0k
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Answer: A: Problem in featureCounts file.
4.8 years ago Wei Shi ★ 3.6k
1
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0
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4.3k
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Answer: A: Rsubread, Error in featureCounts paired end
4.8 years ago Wei Shi ★ 3.6k
1
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1
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2.7k
views
Answer: A: Can't run with gff3 file
4.8 years ago Wei Shi ★ 3.6k
0
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0
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1.4k
views
Answer: A: Killed 9 on macOS Mojave for Rsubread buildindex
4.9 years ago Wei Shi ★ 3.6k
1
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1
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1.4k
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Answer: A: Killed 9 on macOS Mojave for Rsubread buildindex
4.9 years ago Wei Shi ★ 3.6k
1
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0
replies
1.4k
views
Answer: A: Boxplot function not showing all reads length on x-axis
4.9 years ago Wei Shi ★ 3.6k
0
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1
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1.2k
views
Answer: A: How to read Illumina data used in the MACQ project (GSE5350)
updated 5.0 years ago by 50k • written 5.0 years ago by ★ 3.6k
3
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1
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3.9k
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Answer: A: FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
5.0 years ago Wei Shi ★ 3.6k
2
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1
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1.4k
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Answer: A: Improving the performance of the align function from Rsubread for old Roche454 r
5.0 years ago Wei Shi ★ 3.6k
2
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1
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3.8k
views
Answer: A: featureCounts from RnaSeqGeneEdgeRQL returning a matrix of counts full of 0...
5.1 years ago Wei Shi ★ 3.6k
0
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0
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2.9k
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Answer: A: featureCounts for ATAC-seq
5.1 years ago Wei Shi ★ 3.6k
1
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1
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1.9k
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Answer: A: featurecounts Rsubread ERROR on exon_id
5.1 years ago Wei Shi ★ 3.6k
2
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1
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2.1k
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Answer: A: The optimal minMQS parameter in featureCounts for RNA-Seq quantification
5.2 years ago Wei Shi ★ 3.6k
2
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0
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1.7k
views
Answer: A: How to change stringtie gene_id names with ref_gene_id when performing featureCo
5.3 years ago Wei Shi ★ 3.6k
2
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1
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3.0k
views
Answer: C: Rsubread- feature counts
5.3 years ago Wei Shi ★ 3.6k
0
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4
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2.9k
views
Answer: A: Featurecounts issue for counting exons: Not matching total counts mapped for spe
5.4 years ago Wei Shi ★ 3.6k
1
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0
replies
1.1k
views
Answer: A: Rsubread for microbiome data analysis: genome >4GB
5.5 years ago Wei Shi ★ 3.6k
0
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1
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1.5k
views
Answer: A: Options Request for FeatureCounts
5.7 years ago Wei Shi ★ 3.6k
2
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1
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1.4k
views
Answer: A: Perfectly aligning sequences not mapping to worm genome in Subread's featureCoun
5.7 years ago Wei Shi ★ 3.6k
3
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1
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1.4k
views
Answer: C: File not found error when using dupRadar::analyzeDuprates
5.8 years ago Wei Shi ★ 3.6k
1
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0
replies
3.1k
views
Answer: A: Subread FeatureCounts for Exon level quantification: Length estimate for Exons a
5.8 years ago Wei Shi ★ 3.6k
4
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2
replies
4.6k
views
Answer: A: featureCounts for multiple features
updated 5.8 years ago by 50k • written 5.8 years ago by ★ 3.6k
0
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1
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1.1k
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Answer: A: Is circular RNA read out as linear fragments during Rsubread-DESeq2
updated 5.9 years ago by 50k • written 5.9 years ago by ★ 3.6k
0
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0
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2.9k
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Answer: A: lncRNA annotation for featureCouns and STAR
5.9 years ago Wei Shi ★ 3.6k
3
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1
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6.0k
views
Answer: A: strange results with featureCounts
6.0 years ago Wei Shi ★ 3.6k
4
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2
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4.3k
views
Answer: A: Create count matrix with featureCounts for stranded as well as reversely strande
6.1 years ago Wei Shi ★ 3.6k
0
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1
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1.9k
views
Answer: A: Rsubread Installation error
6.1 years ago Wei Shi ★ 3.6k
208 results • Page 1 of 5
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