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Rsubread featureCounts unexpected strand-specifc counts with Ensembl GTF
Sequencing Annotation
9.7 years ago Wei Shi ★ 3.6k
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8
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1.9k
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Feature request for Rsubread::featureCounts: read length adjustment
updated 10.0 years ago by ★ 7.9k • written 10.0 years ago by ★ 3.6k
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1.3k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts - EdgeR DE analysis
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
10.8 years ago Wei Shi ★ 3.6k
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1.3k
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Rsubread - featureCounts for extracting read counts from De novo assembled transcripts
Annotation GO BSgenome cdf BSgenome Rsubread Annotation GO BSgenome cdf BSgenome
10.8 years ago Wei Shi ★ 3.6k
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5
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1.6k
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Illumina Probe_ID used in the LIMMA package for neqc function
Microarray Annotation Normalization Clustering probe limma Microarray Annotation probe
updated 10.8 years ago by ▴ 40 • written 10.8 years ago by ★ 3.6k
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2.2k
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featureCounts read summarization function
Sequencing Annotation Rsubread Sequencing Annotation Rsubread
10.8 years ago Wei Shi ★ 3.6k
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0
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1.4k
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mapping multi-mapping reads in Rsubread (summarizeOverlaps mode ignoring inter feature overlaps)
Annotation Rsamtools Rsubread Annotation Rsamtools Rsubread
11.1 years ago Wei Shi ★ 3.6k
0
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8
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2.2k
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normalization of illumina bead array data
PROcess PROcess
updated 11.3 years ago by ▴ 90 • written 11.3 years ago by ★ 3.6k
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925
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Rsubread buildIndex: Too many sections in reference?
Rsubread Rsubread
11.5 years ago Wei Shi ★ 3.6k
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1
reply
1.0k
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Regarding subread vignette
Sequencing Alignment Rsubread Sequencing Alignment Rsubread
12.6 years ago Wei Shi ★ 3.6k
0
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8
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2.0k
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Rsubread alingner
Alignment Yeast Rsubread Alignment Yeast Rsubread
13.0 years ago Wei Shi ★ 3.6k
0
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13
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2.7k
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multiple hits with countOverlaps function
Sequencing GenomicFeatures Sequencing GenomicFeatures
13.1 years ago Wei Shi ★ 3.6k
0
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0
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1.0k
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limma for identifying differentially expressed genes from illumina data
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
14.7 years ago Wei Shi ★ 3.6k
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0
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943
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Differential anlaysis (limma)
Normalization probe limma beadarray Normalization probe limma beadarray
15.1 years ago Wei Shi ★ 3.6k
0
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8
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2.1k
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How to get NCBI's gene annotation?
Annotation Annotation
15.1 years ago Wei Shi ★ 3.6k
0
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0
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512
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Bead level data from Illumina Sentrix Whole Genome Expression BeadChips
Normalization Normalization
15.3 years ago Wei Shi ★ 3.6k
0
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1
reply
538
views
Outlier removal in Beadarray bead level data analysis
updated 16.9 years ago by ▴ 460 • written 16.9 years ago by ★ 3.6k
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