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Answer: Answer: GSVA error
20 days ago Robert Castelo ★ 3.3k
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1
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224
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Answer: Answer: Storing directories inside an ExperimentHub package?
24 days ago Robert Castelo ★ 3.3k
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1
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491
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Answer: Answer: GSVA on separate healthy and disease datasets
26 days ago Robert Castelo ★ 3.3k
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0
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308
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Answer: Answer: Impute does not work
9 weeks ago Robert Castelo ★ 3.3k
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0
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542
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
4 months ago Robert Castelo ★ 3.3k
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1
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386
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Answer: Answer: Obtaining rsIDs with ENSG and variant ID information
5 months ago Robert Castelo ★ 3.3k
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0
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627
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Answer: Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
5 months ago Robert Castelo ★ 3.3k
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0
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407
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Answer: Answer: GSVA exceeds 1
8 months ago Robert Castelo ★ 3.3k
3
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0
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1.2k
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Answer: Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
10 months ago Robert Castelo ★ 3.3k
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0
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368
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Answer: Answer: VariantFiltering error
10 months ago Robert Castelo ★ 3.3k
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1
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788
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Answer: Answer: GSVA with and without absolute scaling method
12 months ago Robert Castelo ★ 3.3k
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1
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746
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Answer: Answer: GSVA: Error loading interactive web app
14 months ago Robert Castelo ★ 3.3k
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1
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1.1k
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Answer: Answer: GSVA results interpretation
15 months ago Robert Castelo ★ 3.3k
1
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1
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1.5k
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Answer: Answer: 'combined score' calculation with singscore vs gsva
18 months ago Robert Castelo ★ 3.3k
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0
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1.7k
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Answer: Answer: Properly constructing a hypergeometric test
19 months ago Robert Castelo ★ 3.3k
2
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1
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1.2k
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Answer: Answer: MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
22 months ago Robert Castelo ★ 3.3k
2
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1
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2.1k
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Answer: Answer: Why Negative value from GSVA
22 months ago Robert Castelo ★ 3.3k
0
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1
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1.9k
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Answer: Answer: Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
22 months ago Robert Castelo ★ 3.3k
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0
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894
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Answer: Answer: GC content
22 months ago Robert Castelo ★ 3.3k
1
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1
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1.1k
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Answer: Answer: Can GSVA be applied in several sample type and each type only have two replicate
23 months ago Robert Castelo ★ 3.3k
2
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1
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1.4k
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Answer: Answer: How to run GSVA with partially NA genes
23 months ago Robert Castelo ★ 3.3k
2
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0
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1.1k
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Answer: Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
2.0 years ago Robert Castelo ★ 3.3k
1
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0
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1.2k
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Answer: Answer: org.Hs.eg.db，Error: could not find function ".libPath"
2.1 years ago Robert Castelo ★ 3.3k
0
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1
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5.4k
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Answer: Answer: GSVA and ssGSEA output differences
2.1 years ago Robert Castelo ★ 3.3k
2
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1
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2.3k
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Answer: Answer: subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
2.1 years ago Robert Castelo ★ 3.3k
1
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0
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1.2k
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Answer: Answer: Cleaning GeneSets from GSEA
2.1 years ago Robert Castelo ★ 3.3k
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0
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1.1k
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Answer: Answer: GSEA using custom GO annotations
2.1 years ago Robert Castelo ★ 3.3k
0
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0
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790
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Answer: Answer: Running PLAGE gets killed
2.1 years ago Robert Castelo ★ 3.3k
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0
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1.2k
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Answer: Answer: GSVA: for a pathway, can enrichment scores of all samples be negative?
2.2 years ago Robert Castelo ★ 3.3k
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0
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1.2k
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Answer: Answer: GSVA package normalization on gene-length ?
2.4 years ago Robert Castelo ★ 3.3k
0
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1
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1.6k
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Answer: Answer: GOstats - are significantly enriched GO terms with a small "size" meaningful?
2.5 years ago Robert Castelo ★ 3.3k
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2
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1.5k
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Answer: Answer: GenomicScores package: availableGScores and getGScores functions not working
2.6 years ago Robert Castelo ★ 3.3k
2
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1
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2.0k
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Answer: Answer: Questions regard to GSVA and Limma
2.8 years ago Robert Castelo ★ 3.3k
2
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1
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841
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Answer: Answer: Turn of GSVA filtering for method ssGSEA
2.8 years ago Robert Castelo ★ 3.3k
1
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2
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1.8k
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Answer: Answer: Issue with GSVA using dgCMatrix
2.9 years ago Robert Castelo ★ 3.3k
0
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0
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3.0k
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Answer: Answer: GSVA Problem
3.0 years ago Robert Castelo ★ 3.3k
2
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1
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2.2k
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Answer: Answer: isSecondaryAlignment=FALSE with BWA MEM mapped BAM files not working?
3.1 years ago Robert Castelo ★ 3.3k
0
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0
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1.3k
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Answer: Answer: How to set mod0 in sva analysis
3.2 years ago Robert Castelo ★ 3.3k
3
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1
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1.8k
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Answer: Answer: Discrepancy in GSVA for Nanostring when using normalized counts vs rlog as input
3.2 years ago Robert Castelo ★ 3.3k
0
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1
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5.6k
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Answer: Answer: GSVA Error in .mapGeneSetsToFeatures(mapped.gset.idx.list, rownames(expr))
3.2 years ago Robert Castelo ★ 3.3k
1
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1
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1.8k
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Answer: Answer: Selecting or not selecting samples before running GSVA
3.4 years ago Robert Castelo ★ 3.3k
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1
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1.4k
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Answer: A: GSVA on gene sets with 2 genes
3.6 years ago Robert Castelo ★ 3.3k
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0
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1.1k
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Answer: A: Extract GSVA gene rank matrix
3.7 years ago Robert Castelo ★ 3.3k
1
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0
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2.1k
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Answer: A: pre-filtering gene sets for GSVA/ssGSEA
3.8 years ago Robert Castelo ★ 3.3k
0
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1
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2.1k
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Answer: A: Spearman correlation for RNA SEQ data
3.8 years ago Robert Castelo ★ 3.3k
2
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1
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1.8k
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Answer: A: Using GSVA All the pathway score are same
3.9 years ago Robert Castelo ★ 3.3k
1
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1
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3.7k
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Answer: A: How to compare two or more GSVA outputs, when it is not possible to run GSVA at
3.9 years ago Robert Castelo ★ 3.3k
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0
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1.5k
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Answer: A: GSVA on integrated/batch corrected scRNAseq data
3.9 years ago Robert Castelo ★ 3.3k
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0
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1.0k
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Answer: A: Error while installing GSVA
4.0 years ago Robert Castelo ★ 3.3k
0
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1
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2.4k
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Answer: A: GSVA (running group samples separately)
4.0 years ago Robert Castelo ★ 3.3k
164 results • Page 1 of 4
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