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300
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Answer: Answer: Allele frequencies for ALL alleles of one SNP ?
2 days ago Robert Castelo ★ 3.4k
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1
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107
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Answer: Answer: Identifying potentially associated gene set to drug response using GSVA
2 days ago Robert Castelo ★ 3.4k
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1
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211
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Answer: Answer: How to get The evolutionary conservation scores for lncRNAs by the phastCons100w
2 days ago Robert Castelo ★ 3.4k
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1
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3.9k
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Comment: Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
6 days ago Robert Castelo ★ 3.4k
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710
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Comment: Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
6 weeks ago Robert Castelo ★ 3.4k
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1
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710
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Answer: Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
6 weeks ago Robert Castelo ★ 3.4k
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1
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1.1k
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
written 24 months ago by ★ 3.4k
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359
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Answer: Answer: rtracklayer accessing UCSC data table not working
8 weeks ago Robert Castelo ★ 3.4k
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1.4k
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Comment: Comment: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
4 months ago Robert Castelo ★ 3.4k
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1.4k
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Answer: Answer: Should I perform batch correction of normalized RNA-seq counts prior to GSVA?
4 months ago Robert Castelo ★ 3.4k
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2.0k
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Comment: Comment: How should I run ssGSEA Hallmark Enrichment Analysis?
4 months ago Robert Castelo ★ 3.4k
1
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1
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455
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Answer: Answer: Interpretation of GSVA with absRanking=TRUE
5 months ago Robert Castelo ★ 3.4k
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0
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829
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Comment: Comment: GSVA function
5 months ago Robert Castelo ★ 3.4k
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1
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829
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Answer: Answer: GSVA function
6 months ago Robert Castelo ★ 3.4k
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992
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Comment: Comment: Extremely small p-values using Limma for proteomic data
6 months ago Robert Castelo ★ 3.4k
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1
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992
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Comment: Comment: Extremely small p-values using Limma for proteomic data
6 months ago Robert Castelo ★ 3.4k
0
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1
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992
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Comment: Comment: Extremely small p-values using Limma for proteomic data
6 months ago Robert Castelo ★ 3.4k
2
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0
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990
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Answer: Answer: Method to find pathways different between 2 groups
6 months ago Robert Castelo ★ 3.4k
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2
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2.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
6 months ago Robert Castelo ★ 3.4k
2
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1
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2.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Robert Castelo ★ 3.4k
2
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1
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2.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Robert Castelo ★ 3.4k
2
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1
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2.1k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
7 months ago Robert Castelo ★ 3.4k
1
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1
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3.1k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Robert Castelo ★ 3.4k
1
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1
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3.3k
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Answer: Answer: GSVA error
7 months ago Robert Castelo ★ 3.4k
1
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0
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2.9k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
7 months ago Robert Castelo ★ 3.4k
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1
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2.9k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
7 months ago Robert Castelo ★ 3.4k
1
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1
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2.9k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
7 months ago Robert Castelo ★ 3.4k
1
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1
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2.9k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
7 months ago Robert Castelo ★ 3.4k
0
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1
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477
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Answer: Answer: Storing directories inside an ExperimentHub package?
7 months ago Robert Castelo ★ 3.4k
1
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1
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2.9k
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Comment: Comment: Convert Seurat Object to Summarised Experiment or ExpressionSet
7 months ago Robert Castelo ★ 3.4k
1
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0
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865
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Comment: Comment: GSVA on separate healthy and disease datasets
7 months ago Robert Castelo ★ 3.4k
0
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1
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865
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Answer: Answer: GSVA on separate healthy and disease datasets
7 months ago Robert Castelo ★ 3.4k
1
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1
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1.8k
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Comment: Comment: How to make boxplot with pairwise and overall p value from Limma
7 months ago Robert Castelo ★ 3.4k
0
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1
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933
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Comment: Comment: Obtaining pheno data from CEL files
7 months ago Robert Castelo ★ 3.4k
2
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2
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3.1k
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Comment: Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
7 months ago Robert Castelo ★ 3.4k
1
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1
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1.7k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
7 months ago Robert Castelo ★ 3.4k
1
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0
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894
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Answer: Answer: Impute does not work
8 months ago Robert Castelo ★ 3.4k
0
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1
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376
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error with spatialDE::run() and basilisk i/f
basilisk spatialDE
updated 9 months ago by 67k • written 9 months ago by ★ 3.4k
2
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0
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946
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Comment: Comment: outdated GEOmetadb.sqlite
10 months ago Robert Castelo ★ 3.4k
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0
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808
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Answer: Answer: Unexpected results for a differential expression analysis between males and fema
11 months ago Robert Castelo ★ 3.4k
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0
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937
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Comment: Comment: Obtaining rsIDs with ENSG and variant ID information
11 months ago Robert Castelo ★ 3.4k
0
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1
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937
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Answer: Answer: Obtaining rsIDs with ENSG and variant ID information
11 months ago Robert Castelo ★ 3.4k
2
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1
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2.0k
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Answer: Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
11 months ago Robert Castelo ★ 3.4k
0
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0
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628
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Answer: Answer: GSVA exceeds 1
14 months ago Robert Castelo ★ 3.4k
3
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0
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2.0k
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Answer: Answer: Gene set analysis: GSVA, Z-Score, and fold-changes
16 months ago Robert Castelo ★ 3.4k
0
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0
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555
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Answer: Answer: VariantFiltering error
17 months ago Robert Castelo ★ 3.4k
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1
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1.1k
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Answer: Answer: GSVA with and without absolute scaling method
19 months ago Robert Castelo ★ 3.4k
5
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2
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946
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outdated GEOmetadb.sqlite
GEOmetadb
21 months ago • updated 10 months ago Robert Castelo ★ 3.4k
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0
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1.1k
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Comment: Comment: GSVA: Error loading interactive web app
21 months ago Robert Castelo ★ 3.4k
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0
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1.1k
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Comment: Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
21 months ago Robert Castelo ★ 3.4k
461 results • Page 1 of 10
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