Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
1
reply
2.4k
views
Answer: A: GSVA (running group samples separately)
4.0 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
957
views
Answer: A: Why BiocManager try to reinstall dependencies already installed?
4.0 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
2.4k
views
Answer: A: Updating Gene Annotation in GeneSetCollection {GSEABase}
4.1 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
1.7k
views
Answer: A: Method and kcdf arguments in gsva package
4.1 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
1.1k
views
Answer: A: Table expression data from GEO file
4.1 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
1.8k
views
Answer: A: Best way to include RIN in differential expression design
4.1 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
666
views
Answer: A: GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
4.2 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
2.6k
views
Answer: A: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.2 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.5k
views
Answer: A: GSEABase - Map gene/transcript IDs to GOslims?
4.2 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
621
views
Answer: A: generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw fi
4.4 years ago • updated 4.3 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
742
views
Answer: A: how to set strandMode in summarizeOverlaps()?
4.3 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
907
views
Answer: A: gpr format microarray analysis
4.4 years ago Robert Castelo ★ 3.3k
1
vote
2
replies
2.0k
views
Answer: A: Dealing with duplicated genes in camera gene set testing
4.4 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
3.4k
views
Answer: A: How to build and map to a "pre-mRNA" reference transcriptome for single nucleus
4.6 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.4k
views
Answer: A: SVA for repeated measures design
4.6 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
3.1k
views
Answer: A: Collecting unmapped RNA-seq reads
4.7 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
5.1k
views
Answer: A: GSVA on RNAseq data
5.1 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
959
views
Answer: A: GSVA lots of positive values, is this expected behavior?
5.1 years ago Robert Castelo ★ 3.3k
4
votes
1
reply
3.1k
views
Answer: A: Differential expression on GSVA scores using LIMMA
5.1 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
2.5k
views
Answer: A: Are singscore scores comparable between gene sets?
5.2 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.4k
views
Answer: A: Hill shape p-value histogram after differential miRNA expression analysis with D
5.2 years ago Robert Castelo ★ 3.3k
2
votes
0
replies
1.2k
views
Answer: A: GSVA tutorial brainTxDb oligodendrocytic_dn neuronal_dn are same genesets
5.7 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
2.0k
views
Answer: A: Meaning of zero for ssGESA value calculated by GSVA package
5.8 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
1.5k
views
Answer: A: GSVA with NanoString nCounter Data - Pre-Processing
5.8 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
1.8k
views
Answer: A: Input genes for GSVA
6.1 years ago Robert Castelo ★ 3.3k
2
votes
3
replies
6.6k
views
Answer: A: Pre-processing RNA-seq data (normalization and transformation) for GSVA
6.1 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.3k
views
Answer: A: The selection of bandwidth of GSVA
6.2 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
2.4k
views
Answer: A: GSVA for single sample
6.3 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.1k
views
Answer: A: Run tweeDEseq on Flux-capacitor RPKM values
6.3 years ago Robert Castelo ★ 3.3k
2
votes
1
reply
1.4k
views
Answer: A: Error thrown by GSEABase::getBroadSets function: Error: 'getBroadSets' failed to
6.4 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
1.9k
views
Answer: A: [gwascat] Updated GWAS catalog from file
6.4 years ago Robert Castelo ★ 3.3k
3
votes
0
replies
1.2k
views
Answer: A: Gene missing in TxDb.Hsapiens.UCSC.hg19.knownGene
6.5 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
2.3k
views
Answer: A: GSVA package scores are opposite on mac and windows
6.6 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.5k
views
Answer: A: Set rnaseq locial flag during GSVA
6.7 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.4k
views
Answer: A: library VaraintFiltration looking for explanation of pedigree file
6.7 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
2.6k
views
Answer: A: GSVA: questions about the bootstrap p-value
6.9 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
3.8k
views
Answer: A: mm10 phastCons data for use with ATACseqQC
7.0 years ago Robert Castelo ★ 3.3k
5
votes
1
reply
10k
views
Answer: A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7.0 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.3k
views
Answer: A: FUNCTIONAL ENRICHMENT ANALYSIS
7.0 years ago Robert Castelo ★ 3.3k
3
votes
1
reply
2.5k
views
Answer: A: GSVA indifferent to 'abs.ranking'
7.0 years ago Robert Castelo ★ 3.3k
3
votes
1
reply
1.4k
views
Answer: A: Crash GSVA 1.24.0 with bootstrapping
7.0 years ago Robert Castelo ★ 3.3k
2
votes
1
reply
3.4k
views
Answer: A: How to convert graphNEL object into Adjacency Matrix?
7.1 years ago Robert Castelo ★ 3.3k
1
vote
1
reply
1.4k
views
Answer: A: qpgraph's qpPCC function giving different results than cor.test()
7.3 years ago Robert Castelo ★ 3.3k
1
vote
2
replies
1.5k
views
Answer: A: [GSVM] bootstrapping error
7.3 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.6k
views
Answer: A: injectSNPS only for common variants
7.5 years ago Robert Castelo ★ 3.3k
1
vote
0
replies
1.4k
views
Answer: A: Unclear of calculating correlations with case+control samples together
7.6 years ago Robert Castelo ★ 3.3k
2
votes
0
replies
1.8k
views
Answer: A: Fit a multinomial to RNA-seq count data
7.8 years ago Robert Castelo ★ 3.3k
2
votes
0
replies
8.8k
views
Answer: A: Does GSVA enrichment score comes negative?
7.9 years ago Robert Castelo ★ 3.3k
0
votes
1
reply
1.5k
views
Answer: A: GSVA (1.18.0) segfaulting on small dataset
8.0 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.5k
views
Answer: A: Inferring qualitative gene regulatory interactions from microarray data
8.1 years ago Robert Castelo ★ 3.3k
165 results • Page 2 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6