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0
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0
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466
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Variant Filtering on very large VCF files
VariantAnnotation VariantFiltering
7 months ago Bogdan ▴ 670
0
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0
replies
575
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conversion a VCF file into a MAF file
VCFArray maftools
9 months ago Bogdan ▴ 670
0
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2
replies
1.4k
views
about baseMean in DEseq2
DESeq2
written 2.8 years ago by ▴ 670
0
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1
reply
550
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BioC packages in cancer genomics
genomics cancer
updated 14 months ago by ★ 3.9k • written 14 months ago by ▴ 670
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1
reply
628
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GRanges list convert into igraph format
GRanges igraph
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 670
0
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0
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454
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normFactors or calcNormFactors (computing the normalization or scaling factors)
limma edgeR csaw
17 months ago Bogdan ▴ 670
0
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0
replies
467
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RUVg for SNAP-ChIP ?
RUVSeq
17 months ago Bogdan ▴ 670
0
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1
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2.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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1
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2.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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2
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2.3k
views
Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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0
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3.0k
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Comment: Comment: Spike-in normalization in EdgeR
17 months ago Bogdan ▴ 670
0
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0
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3.8k
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Comment: Comment: Using edgeR and a spike-in to calculate absolute abundance
17 months ago Bogdan ▴ 670
0
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1
reply
2.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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1
reply
2.3k
views
Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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1
reply
2.3k
views
Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
1
vote
12
replies
2.3k
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normalization of ChIP-seq data by using the spike-ins or by using total library sizes
DESeq2 edgeR limma
updated 17 months ago by 42k • written 18 months ago by ▴ 670
0
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0
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2.3k
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Comment: Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
17 months ago Bogdan ▴ 670
0
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0
replies
1.0k
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Comment: Comment: DiffBind and peak counts as input
18 months ago Bogdan ▴ 670
2
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4
replies
1.0k
views
DiffBind and peak counts as input
DESeq2 edgeR DiffBind
updated 17 months ago by ★ 5.2k • written 18 months ago by ▴ 670
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0
replies
1.0k
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Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
18 months ago Bogdan ▴ 670
0
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1
reply
1.0k
views
Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
18 months ago Bogdan ▴ 670
0
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1
reply
1.0k
views
Comment: Comment: statistics : edger or DESeq2 to asses the differential binding using the averag
18 months ago Bogdan ▴ 670
1
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7
replies
1.0k
views
statistics : edger or DESeq2 to asses the differential binding using the average scores
DESeq2 edgeR
updated 17 months ago by • 0 • written 18 months ago by ▴ 670
3
votes
9
replies
1.6k
views
scDblFinder and xgboost
scDblFinder xgboost
written 2.0 years ago by ▴ 670
1
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0
replies
2.3k
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Comment: Comment: installation of BioC packages on Mac M1 Monterrey OS
19 months ago Bogdan ▴ 670
0
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3
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1.3k
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ShortRead Installation in R 4.2.0 and zlib library
R-4 ShortRead
19 months ago Bogdan ▴ 670
0
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0
replies
1.3k
views
Comment: Comment: ShortRead Installation in R 4.2.0 and zlib library
19 months ago Bogdan ▴ 670
0
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0
replies
1.5k
views
Answer: Answer: bigwig to counts
19 months ago • updated 15 months ago Bogdan ▴ 670
1
vote
1
reply
2.3k
views
installation of BioC packages on Mac M1 Monterrey OS
limma Bioconductor edgeR
19 months ago Bogdan ▴ 670
0
votes
1
reply
1.5k
views
bigwig to counts
DESeq2 edgeR bigwig limma
19 months ago • updated 15 months ago Bogdan ▴ 670
0
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2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph wiggleplotr bigwig wig
updated 20 months ago by • 0 • written 20 months ago by ▴ 670
0
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1
reply
1.7k
views
Comment: Comment: performing the differential binding in ChIP-seq
24 months ago Bogdan ▴ 670
0
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0
replies
1.7k
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Comment: Comment: performing the differential binding in ChIP-seq
24 months ago Bogdan ▴ 670
0
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6
replies
1.7k
views
performing the differential binding in ChIP-seq
ChIP-seq
updated 13 months ago by • 0 • written 24 months ago by ▴ 670
0
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1
reply
1.2k
views
Comment: Comment: scDblFinder and amulet
24 months ago Bogdan ▴ 670
0
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1
reply
1.2k
views
Comment: Comment: scDblFinder and amulet
2.0 years ago Bogdan ▴ 670
0
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6
replies
1.2k
views
scDblFinder and amulet
scDblFinder
updated 24 months ago by • 0 • written 2.0 years ago by ▴ 670
0
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1
reply
2.1k
views
Comment: Comment: reading hdf5 files without hdf5r
2.0 years ago Bogdan ▴ 670
3
votes
5
replies
2.1k
views
reading hdf5 files without hdf5r
hdf5r
updated 2.0 years ago by 16k • written 2.0 years ago by ▴ 670
0
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0
replies
2.1k
views
Comment: Comment: reading hdf5 files without hdf5r
2.0 years ago Bogdan ▴ 670
0
votes
1
reply
523
views
download
BSgenome.Hsapiens.UCSC.hg38 BSgenome.Hsapiens.UCSC.hg38.masked
2.0 years ago Bogdan ▴ 670
0
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0
replies
523
views
Answer: Answer: download
2.0 years ago Bogdan ▴ 670
0
votes
0
replies
821
views
Comment: Comment: scATAC-seq median fragments per cell
2.1 years ago Bogdan ▴ 670
0
votes
1
reply
821
views
scATAC-seq median fragments per cell
SnapATAC Signac ArchR scATAC-seq
2.1 years ago Bogdan ▴ 670
1
vote
1
reply
1.2k
views
installing the packages such as BSgenome.Hsapiens.UCSC.hg19
BSgenome.Hsapiens.UCSC.hg19
updated 2.1 years ago by 16k • written 2.1 years ago by ▴ 670
0
votes
1
reply
807
views
peak annotation
ChIPpeakAnno Annotation
updated 2.1 years ago by ▴ 70 • written 2.2 years ago by ▴ 670
1
vote
2
replies
1.4k
views
Gviz and datatracks
Gviz
updated 2.2 years ago by • 0 • written 2.3 years ago by ▴ 670
0
votes
1
reply
749
views
meta-gene profiles
ChIP-seq
updated 2.2 years ago by ▴ 60 • written 2.2 years ago by ▴ 670
0
votes
1
reply
906
views
saving png images and X11
ChipQC
updated 2.2 years ago by ★ 4.1k • written 2.2 years ago by ▴ 670
0
votes
0
replies
913
views
Comment: Comment: ChIP-seq or CUT&RUN enrichment
2.2 years ago Bogdan ▴ 670
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