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Comment: C: RNA-seq differentially expressed gene finding methods
11.3 years ago Paul Geeleher ★ 1.3k
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Answer: A: Limma package and minimal number of genes
11.5 years ago Paul Geeleher ★ 1.3k
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1
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1.3k
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Answer: A: Gene expression and multivariables
11.5 years ago Paul Geeleher ★ 1.3k
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2.4k
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Answer: A: GWAS with family data
11.6 years ago Paul Geeleher ★ 1.3k
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1
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1.7k
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Answer: A: recommend package for exon array analysis
11.7 years ago Paul Geeleher ★ 1.3k
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1
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1.7k
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Answer: A: help with array based microRNA data analysis
11.9 years ago Paul Geeleher ★ 1.3k
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Comment: C: scholarly reference for "don't draw PCA/heatmap dendrograms on DEGs"
12.0 years ago Paul Geeleher ★ 1.3k
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3.2k
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Comment: C: Average expression value from limma
12.6 years ago Paul Geeleher ★ 1.3k
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3.2k
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Answer: A: Average expression value from limma
12.6 years ago Paul Geeleher ★ 1.3k
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Comment: C: DESeq2 vs limma/voom: PCA completely different. How to proceed?
12.6 years ago Paul Geeleher ★ 1.3k
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1.5k
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Comment: C: Microarray Analysis of Rat Gene 2.0 ST arrays
12.6 years ago Paul Geeleher ★ 1.3k
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0
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1.1k
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Answer: A: transform gwaa.data (Genabel) to snp.matrix (chopsticks)
12.6 years ago Paul Geeleher ★ 1.3k
0
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1.9k
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Answer: A: spline example from limma user's guide
12.6 years ago Paul Geeleher ★ 1.3k
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1.1k
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Answer: A: How to use 'ebayes' for small samples?
12.6 years ago Paul Geeleher ★ 1.3k
0
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0
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884
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Answer: A: Estimate how much a factor contributes to the variation
12.7 years ago Paul Geeleher ★ 1.3k
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1.5k
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Comment: C: Fwd: statistical test for time course data
12.8 years ago Paul Geeleher ★ 1.3k
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0
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1.3k
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Answer: A: significance of correlation genes/miRNAs expression
12.9 years ago Paul Geeleher ★ 1.3k
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1
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1.3k
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Answer: A: correlation between two pathways' genes
13.0 years ago Paul Geeleher ★ 1.3k
0
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0
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1.2k
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Answer: A: Some basic questions for two-color array
13.1 years ago Paul Geeleher ★ 1.3k
0
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0
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1.9k
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Answer: A: Difference number of probesets after RMA with Oligo package and APT
13.1 years ago Paul Geeleher ★ 1.3k
0
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1
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1.5k
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Answer: A: reviews for quality control
13.3 years ago Paul Geeleher ★ 1.3k
0
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2
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2.3k
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Answer: A: Should AgiMicroRna and GeneSpring quantile normalisation be the same ?
13.3 years ago Paul Geeleher ★ 1.3k
0
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0
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1.3k
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Answer: A: differential gene set analysis
13.6 years ago Paul Geeleher ★ 1.3k
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0
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883
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Answer: A: Difficulty with limma contrast matrix creation
13.7 years ago Paul Geeleher ★ 1.3k
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0
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2.2k
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Answer: A: how GSEA phenotype label works?
13.7 years ago Paul Geeleher ★ 1.3k
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0
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2.3k
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Answer: A: Affymetrix Intronic Normalization Control Probes Differentially Expressed?
13.7 years ago Paul Geeleher ★ 1.3k
0
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1
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
0
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1
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2.3k
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Answer: A: Reading 5000 celfiles with ReadAffy
13.8 years ago Paul Geeleher ★ 1.3k
0
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1
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
0
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1
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
0
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2
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
0
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1
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
1
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0
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2.5k
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TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
13.8 years ago Paul Geeleher ★ 1.3k
0
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1
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2.7k
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Comment: C: Loading quantiles normalized root data in XPS
13.8 years ago Paul Geeleher ★ 1.3k
0
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13
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2.7k
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Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 13.8 years ago by ★ 3.9k • written 13.8 years ago by ★ 1.3k
0
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0
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1.6k
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Answer: A: Plot signal distribution in miRNA arrays
14.3 years ago Paul Geeleher ★ 1.3k
0
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0
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3.1k
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Answer: A: cause 'memory not mapped'
14.5 years ago Paul Geeleher ★ 1.3k
0
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0
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4.5k
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Comment: C: extract intensity values from AffyBatch
14.6 years ago Paul Geeleher ★ 1.3k
0
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0
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1.1k
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miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA RmiR miRNA RmiR
14.6 years ago Paul Geeleher ★ 1.3k
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0
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2.0k
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Answer: A: Limma, eBayes different sample size of groups and adjustment
14.6 years ago Paul Geeleher ★ 1.3k
0
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0
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4.9k
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Answer: A: convertion from SAM to BAM
14.6 years ago Paul Geeleher ★ 1.3k
0
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0
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4.4k
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Comment: C: package for collapsing probe id to entrezid or gene symbols
14.7 years ago Paul Geeleher ★ 1.3k
0
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0
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3.6k
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Comment: C: exonsBy() function from GenomicFeature, preserve transcript names?
14.9 years ago Paul Geeleher ★ 1.3k
1
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2
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3.6k
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exonsBy() function from GenomicFeature, preserve transcript names?
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ★ 1.3k
0
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1
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1.2k
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BiomaRt down?
biomaRt biomaRt
updated 14.9 years ago by ▴ 220 • written 14.9 years ago by ★ 1.3k
0
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0
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851
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Answer: A: regarding single colour agilent microarray data
14.9 years ago Paul Geeleher ★ 1.3k
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0
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1.3k
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Using annotation package how can I convert the probe > ID's to Gene names.
Annotation GO probe affy convert Annotation GO probe affy convert
14.9 years ago Paul Geeleher ★ 1.3k
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0
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1.5k
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Answer: A: Using annotation package how can I convert the probe > ID's to Gene names.
14.9 years ago Paul Geeleher ★ 1.3k
0
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0
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2.5k
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Answer: A: Analysing multiple-platform gene expression data
14.9 years ago Paul Geeleher ★ 1.3k
0
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1
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1.1k
views
Answer: A: question about R package to get gene centric values
15.0 years ago Paul Geeleher ★ 1.3k
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