Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
1.8k
views
Answer: A: Drawing a HeatMapList while retaining the original row order of each heat map
8.7 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.9k
views
Comment: C: Hunting for Human Infectious Agents in Cancer using data from Genomics England's
8.7 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
3.8k
views
Comment: C: Using Sailfish estimated read-counts for DESeq2 analysis
8.8 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.2k
views
Comment: C: Camera gene set interpretation
8.8 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.0k
views
Comment: C: Appropriate design matrix set up in limma for 2-factor approches with NA values
8.8 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
4.6k
views
Comment: C: RNA-seq paired analysis design
8.8 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
16k
views
Comment: C: Possible ways of performing differential gene expression and analysis of RNA-Seq
8.9 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.8k
views
Answer: A: Creating design matrix in LIMMA
8.9 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
4.6k
views
Comment: C: Why does rlog and vst use normalized counts?
8.9 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
4.6k
views
Answer: A: Why does rlog and vst use normalized counts?
8.9 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.6k
views
Comment: C: design of edgeR GLM test
8.9 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.1k
views
Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
9.0 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.1k
views
Answer: A: DEG analysis of chemo-sensitive vs resistance by limma
9.0 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.1k
views
Comment: C: DEG analysis of chemo-sensitive vs resistance by limma
9.0 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
1.2k
views
Comment: C: LogFC in Limma
9.0 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
1.9k
views
Answer: A: M3D package in Bioconductor 3.4
9.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.9k
views
Comment: C: Possible transcription factor binding site enrichment analysis in R/Bioconductor
9.0 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.9k
views
Answer: A: Possible transcription factor binding site enrichment analysis in R/Bioconductor
9.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.9k
views
Comment: C: Possible transcription factor binding site enrichment analysis in R/Bioconductor
9.0 years ago Steve Lianoglou ★ 13k
1
vote
2
replies
3.2k
views
Comment: C: edgeR: Tagwise dispersion when using offset matrix
9.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.2k
views
Answer: A: DESeq2: Outliers, covariates and number of replicates
9.0 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
4.5k
views
Answer: A: DESeq2 size.factor estimation
9.0 years ago Steve Lianoglou ★ 13k
0
votes
2
replies
3.3k
views
Comment: C: Test whether expression levels of two gene sets are significantly different
9.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.2k
views
Comment: C: Help with limma contrast/design matrices
9.0 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
3.3k
views
Answer: A: Test whether expression levels of two gene sets are significantly different
9.0 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
8.0k
views
Comment: C: Non-integer counts from tximport OK for edgeR / DESeq2?
9.1 years ago Steve Lianoglou ★ 13k
1
vote
0
replies
17k
views
Answer: A: Error in Knit R Markdown document (could not find function "Biocexptpkg")
9.1 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.7k
views
Comment: C: Why the log fold change of some genes returned by edgeR is not compatible with t
9.1 years ago Steve Lianoglou ★ 13k
5
votes
0
replies
4.4k
views
Answer: A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen
9.1 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.8k
views
Comment: C: Limma-Voom which of two models is correct?
9.1 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
1.7k
views
Comment: C: CNV caller software
9.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
1.7k
views
Comment: C: CNV caller software
9.2 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.4k
views
Comment: C: biocLite installs older version of SummarizedExperiment package
9.2 years ago Steve Lianoglou ★ 13k
2
votes
1
reply
2.4k
views
Answer: A: biocLite installs older version of SummarizedExperiment package
9.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.9k
views
Comment: C: DESeq2: Possible issue with colData and sorting
9.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
3.9k
views
Comment: C: DESeq2: Possible issue with colData and sorting
9.2 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
3.9k
views
Comment: C: DESeq2: Possible issue with colData and sorting
9.2 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
3.9k
views
Answer: A: DESeq2: Possible issue with colData and sorting
9.2 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.4k
views
Comment: C: DiffBind installation error in R & Rstudio?
9.2 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
6.9k
views
Comment: C: Voom: need at least two non-NA values to interpolate
9.2 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
6.9k
views
Comment: C: Voom: need at least two non-NA values to interpolate
9.2 years ago Steve Lianoglou ★ 13k
2
votes
1
reply
6.9k
views
Answer: A: Voom: need at least two non-NA values to interpolate
9.2 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
2.1k
views
Comment: C: limma: genas + arrayweights = OK?
updated 9.2 years ago by 53k • written 10.2 years ago by ★ 13k
0
votes
1
reply
1.5k
views
Comment: C: apply over the 'rows' of a GRanges object (and/or: is there a fiveprime() funct
9.3 years ago Steve Lianoglou ★ 13k
4
votes
1
reply
4.2k
views
Answer: C: DEseq2 with limited gene set
9.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
3.5k
views
Answer: C: The recount package is not available for R version 3.3.1
9.3 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.3k
views
Comment: C: major camera change from limma 3.22 to 3.28?
9.3 years ago Steve Lianoglou ★ 13k
0
votes
1
reply
2.1k
views
Answer: A: DESeq2 for R 3.1.3 version
9.3 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
3.3k
views
Answer: A: How to carry out differential gene expression starting with a table of TMM norma
9.3 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
2.3k
views
Comment: C: Filtering after a contrast
9.3 years ago Steve Lianoglou ★ 13k
1,508 results • Page 5 of 31
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6