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1
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1.2k
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Answer:
Answer: How can i fix this problem in R
21 months ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.8k
views
Comment:
Comment: Help with limma contrast, difference of a difference?
21 months ago
Steve Lianoglou
★ 13k
1
vote
2
replies
1.8k
views
Answer:
Answer: Help with limma contrast, difference of a difference?
21 months ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.1k
views
Answer:
Answer: multiple annotated 3'UTR for same transcript from bioMart
22 months ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.8k
views
Answer:
Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a
22 months ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.1k
views
Comment:
Comment: Which Limma guide is recommended ?
23 months ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.7k
views
Answer:
Answer: unbalanced cell count and unbalanced read count across samples in pseudobulk dif
23 months ago
Steve Lianoglou
★ 13k
1
vote
1
reply
809
views
Answer:
Answer: I want to clarify difference between below two codes for analysis of DEGs. I got
23 months ago
Steve Lianoglou
★ 13k
1
vote
0
replies
2.6k
views
Answer:
Answer: TPM to raw counts
2.2 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.8k
views
Comment:
Comment: Adjust for base line gene expression in limma model
2.3 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
620
views
Answer:
Answer: limma KNN classification with voom-transformed data
2.3 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.6k
views
Comment:
Comment: DEseq2 replicate normalization
2.3 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.6k
views
Comment:
Comment: DEseq2 replicate normalization
2.3 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.6k
views
Answer:
Answer: DEseq2 replicate normalization
2.3 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
910
views
Comment:
Comment: Coding Style for BioC Package submissions: camelCaps or snake_case?
2.3 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
1.2k
views
Comment:
Comment: edgeR shows different results for same dataset
2.4 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.2k
views
Answer:
Answer: edgeR shows different results for same dataset
2.4 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
905
views
Answer:
Answer: Identifying presence of certain genes
2.4 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
661
views
Answer:
Answer: Pushing a new build of package to Bioconductor
2.6 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
1.1k
views
Comment:
Comment: makeContrasts question
2.6 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
886
views
Comment:
Comment: Raw RNA-seq data: column names are sequences
2.6 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
2.2k
views
Comment:
Comment: Best practice for quantifying sncRNA
2.7 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
1.3k
views
Comment:
Comment: Differential Expression analysis of specific list of genes
2.7 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.3k
views
Comment:
Comment: Differential Expression analysis of specific list of genes
2.7 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
3.0k
views
Comment:
Comment: Problem with DESeq2 installation using in R 1.4.1717
2.7 years ago
Steve Lianoglou
★ 13k
2
votes
0
replies
1.1k
views
Answer:
Answer: No counts, just fold change data
2.8 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
2.0k
views
Answer:
Answer: CibersortX running error for Single cell-RNA
2.8 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.7k
views
Comment:
Comment: ColData use only certain variable within
2.8 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
5.9k
views
Comment:
Comment: Complexheatmap Installation Issue
3.2 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
2.2k
views
Answer:
Answer: scuttle::aggregateAcrossCells() crashes R on large SingleCellExperiment
3.2 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
881
views
Job:
Computational Biologist at Denali Therapeutics
Transcriptomics
SingleCell
JobPosting
3.2 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
1.4k
views
Answer:
Answer: Treatment AND Sex in EdgeR
3.4 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
883
views
Comment:
Comment: SUPPORT SITE UPGRADE COMPLETE
3.4 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.6k
views
Comment:
C: Different geneset same p-values in topGO
3.5 years ago
Steve Lianoglou
★ 13k
5
votes
1
reply
869
views
Answer:
A: edgeR and batch effects
3.5 years ago
Steve Lianoglou
★ 13k
4
votes
0
replies
1.4k
views
Answer:
A: Calculating standard deviation for a few genes using RNAseq data
3.5 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
2.4k
views
Comment:
C: visualize significant upregultaed genes and downregultaed genes with different c
3.6 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
1.2k
views
Comment:
C: Tidyverse can be a bit tidiest to work with....
3.6 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
5.9k
views
Answer:
A: scRNA-seq pseudo-bulk differential expression analysis with pseudobulkDGE()
3.6 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
658
views
Comment:
C: Problem in analyzing microarray with duplicate or triplicate data
3.8 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
2.0k
views
Comment:
C: ComplexHeatmap - R Session aborted after calling Heatmap()
3.9 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
671
views
Answer:
A: treating RNA-seq gene expression data in cpm for edgeR
3.9 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
3.1k
views
Comment:
C: Possible batch effect correction with RNA-Seq data when the batches do not conta
3.9 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
3.1k
views
Answer:
A: Possible batch effect correction with RNA-Seq data when the batches do not conta
3.9 years ago
Steve Lianoglou
★ 13k
1
vote
0
replies
675
views
Answer:
A: RNA-Seq analysis with DESeq2: showing two conditions do *not* significantly diff
4.0 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
719
views
Comment:
C: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
4.1 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
845
views
Answer:
A: Any possibility to "cache" TxDb object?
4.1 years ago
Steve Lianoglou
★ 13k
1
vote
1
reply
1.3k
views
Comment:
C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.1 years ago
Steve Lianoglou
★ 13k
0
votes
1
reply
1.3k
views
Comment:
C: Weird error in Rstudio trying to retreive and load genomic data from external da
4.1 years ago
Steve Lianoglou
★ 13k
1,506 results • Page
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