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2.4k
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Answer: A: read counts of paired end reads for DESeq2 analysis
9.6 years ago Steve Lianoglou ★ 13k
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1
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2.5k
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Answer: A: edgeR - inconsistent logFC sign
9.6 years ago Steve Lianoglou ★ 13k
2
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1
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3.5k
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Answer: A: Modifying eset@assayData$exprs : Error : cannot change value of locked binding f
9.6 years ago Steve Lianoglou ★ 13k
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1.6k
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Comment: C: How to compute Gene Regulatory Network on microarraay data
9.6 years ago Steve Lianoglou ★ 13k
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0
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4.2k
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Answer: A: Kernel Ridge Regression in R for Drug-Target Interaction
9.6 years ago Steve Lianoglou ★ 13k
2
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1
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4.0k
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Answer: A: Differing topTable() results with Limma with and without specifying coefficient
9.6 years ago Steve Lianoglou ★ 13k
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1
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1.1k
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Answer: A: queryLoc2refLoc not implemented?
9.6 years ago Steve Lianoglou ★ 13k
1
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0
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1.8k
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Answer: A: CellCODE estimate cell proportions SPV analysis grouping comparisons faulty
9.6 years ago Steve Lianoglou ★ 13k
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0
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1.3k
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Answer: A: Functions of DESeq2 package
9.6 years ago Steve Lianoglou ★ 13k
2
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1
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1.5k
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Answer: A: limma making contrasts appropriately
9.6 years ago Steve Lianoglou ★ 13k
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1.3k
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Comment: C: AnnotatedDataFrame crashes MS Visual Studio
9.6 years ago Steve Lianoglou ★ 13k
3
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2.0k
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Answer: A: limma experimental design
9.6 years ago Steve Lianoglou ★ 13k
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0
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3.0k
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Answer: A: How to get list of genes that are DE from the goseq analysis results
9.6 years ago Steve Lianoglou ★ 13k
2
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1
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4.8k
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Comment: C: RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to a
9.6 years ago Steve Lianoglou ★ 13k
0
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1
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4.8k
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Comment: C: RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to a
9.7 years ago Steve Lianoglou ★ 13k
1
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1
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1.7k
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Comment: C: Multiple transcription factors over expression analysis
9.7 years ago Steve Lianoglou ★ 13k
1
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1
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4.8k
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Comment: C: RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to a
9.7 years ago Steve Lianoglou ★ 13k
1
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1
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4.8k
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Comment: C: RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to a
9.7 years ago Steve Lianoglou ★ 13k
0
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1
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4.8k
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Comment: C: RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to a
9.7 years ago Steve Lianoglou ★ 13k
1
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0
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2.1k
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Comment: C: A rational way for selecting the number of DEG with significant p-value for GSEA
9.7 years ago Steve Lianoglou ★ 13k
1
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0
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8.4k
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Comment: C: CPM filtering in deseq2
9.7 years ago Steve Lianoglou ★ 13k
1
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2
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8.4k
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Comment: C: CPM filtering in deseq2
9.7 years ago Steve Lianoglou ★ 13k
1
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0
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2.1k
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Answer: A: A rational way for selecting the number of DEG with significant p-value for GSEA
9.7 years ago Steve Lianoglou ★ 13k
0
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0
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1.7k
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Comment: C: Post Doctorate Position Available
9.7 years ago Steve Lianoglou ★ 13k
0
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1
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3.7k
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Answer: A: Arguments for camera (gene set analysis)
9.7 years ago Steve Lianoglou ★ 13k
1
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0
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25k
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Comment: C: Converting first column to rownames
9.7 years ago Steve Lianoglou ★ 13k
0
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0
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25k
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Answer: A: Converting first column to rownames
9.7 years ago Steve Lianoglou ★ 13k
1
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1
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2.6k
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Answer: A: unable to find Lumi package in R
9.7 years ago Steve Lianoglou ★ 13k
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1
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2.1k
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Comment: C: Normalisation of RNA seq data
9.7 years ago Steve Lianoglou ★ 13k
0
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1
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6.1k
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Comment: C: remove batch effect using limma
9.8 years ago Steve Lianoglou ★ 13k
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1
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6.1k
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Comment: C: remove batch effect using limma
9.8 years ago Steve Lianoglou ★ 13k
1
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1
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1.9k
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Comment: C: mas5 normalization gives negative values
9.8 years ago Steve Lianoglou ★ 13k
3
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1
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2.6k
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Comment: C: Help to find Volunteer who can review my bioconductor package before submission
9.8 years ago Steve Lianoglou ★ 13k
0
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1
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15k
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Comment: C: how DESeq calculates p-value ?
9.8 years ago Steve Lianoglou ★ 13k
0
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0
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7.1k
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Comment: C: Differences between edgeR's and limma+voom's implementation of camera/roast/rome
9.8 years ago Steve Lianoglou ★ 13k
1
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0
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2.8k
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Answer: A: RUVg or RUVs
9.8 years ago Steve Lianoglou ★ 13k
1
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1
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7.1k
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Answer: A: Differences between edgeR's and limma+voom's implementation of camera/roast/rome
9.8 years ago Steve Lianoglou ★ 13k
2
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1
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2.7k
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Answer: A: mean-variance corrected data from voom
9.8 years ago Steve Lianoglou ★ 13k
0
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2
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4.1k
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Comment: C: DESeq2 filter out my expression gene
9.8 years ago Steve Lianoglou ★ 13k
0
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0
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4.1k
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Answer: A: DESeq2 filter out my expression gene
9.8 years ago Steve Lianoglou ★ 13k
0
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2
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3.8k
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Comment: C: Rqc for RNA-Seq data
9.8 years ago Steve Lianoglou ★ 13k
1
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1
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3.1k
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Comment: C: Limma/oligo always crashing
9.8 years ago Steve Lianoglou ★ 13k
0
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0
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3.1k
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Comment: C: Limma/oligo always crashing
9.8 years ago Steve Lianoglou ★ 13k
0
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1
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3.1k
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Comment: C: Limma/oligo always crashing
9.8 years ago Steve Lianoglou ★ 13k
0
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2
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3.8k
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Comment: C: Rqc for RNA-Seq data
9.8 years ago Steve Lianoglou ★ 13k
2
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0
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3.8k
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Answer: A: Rqc for RNA-Seq data
9.8 years ago Steve Lianoglou ★ 13k
6
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1
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21k
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Answer: A: when to apply quantile normalization with voom in limma/voom framework with RNA-
9.8 years ago Steve Lianoglou ★ 13k
0
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1
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21k
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Comment: C: when to apply quantile normalization with voom in limma/voom framework with RNA-
updated 9.8 years ago by 53k • written 9.8 years ago by ★ 13k
0
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0
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3.5k
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Comment: C: New Version of CummeRbund?
9.8 years ago Steve Lianoglou ★ 13k
0
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0
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3.0k
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Answer: A: cross platform normalization in R
9.8 years ago Steve Lianoglou ★ 13k
1,508 results • Page 7 of 31
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