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Comment: C: How to list all "..." parameters inside R function
4.2 years ago Steve Lianoglou ★ 13k
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18k
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Answer: A: R studio input style for generating heatmap (RNAseq)
4.2 years ago Steve Lianoglou ★ 13k
2
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1
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18k
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Comment: C: R studio input style for generating heatmap (RNAseq)
4.2 years ago Steve Lianoglou ★ 13k
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1.2k
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Comment: C: Design to analyze experiment with multiple samples from the same biological enti
4.2 years ago Steve Lianoglou ★ 13k
2
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2
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1.2k
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Answer: A: Design to analyze experiment with multiple samples from the same biological enti
4.2 years ago Steve Lianoglou ★ 13k
1
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0
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477
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Answer: A: limma how to extract rest of output
4.2 years ago Steve Lianoglou ★ 13k
0
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1
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755
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Answer: A: DESeq2 Complex Model
4.3 years ago Steve Lianoglou ★ 13k
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0
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1.4k
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Comment: C: All genes display positive fold change in topTable results after limma
4.3 years ago Steve Lianoglou ★ 13k
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1
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871
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Comment: C: edgeR - design matrix and contrasts for paired data problems
4.3 years ago Steve Lianoglou ★ 13k
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1
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642
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Comment: C: Design matrix design for the differentially expression analysis
4.3 years ago Steve Lianoglou ★ 13k
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13k
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Answer: A: Update all/some/none? [a/s/n]:
4.3 years ago Steve Lianoglou ★ 13k
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0
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1.0k
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Answer: A: I have installed bioconductor, R still asks me to install it
4.3 years ago Steve Lianoglou ★ 13k
1
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1
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1.6k
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Answer: A: Error with cell annotation using singleR
4.3 years ago Steve Lianoglou ★ 13k
1
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1
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811
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Answer: A: Should the rlog normalised gene expression counts be further normalised?
4.4 years ago Steve Lianoglou ★ 13k
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0
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1.1k
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Answer: A: PureCN version clashes at GitHub and Bioconductor
4.5 years ago Steve Lianoglou ★ 13k
0
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1
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3.3k
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Comment: C: Limma residuals matrix
4.5 years ago Steve Lianoglou ★ 13k
3
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1.5k
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Answer: A: Limma analysis on a subset of data
4.5 years ago Steve Lianoglou ★ 13k
0
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0
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777
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Comment: C: Trying to download VIPER
4.5 years ago Steve Lianoglou ★ 13k
0
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0
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613
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Comment: C: how to a load workflow package
4.6 years ago Steve Lianoglou ★ 13k
0
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0
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841
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Comment: C: How to decided on genes linked by differential binding peaks in opposite conditi
4.6 years ago Steve Lianoglou ★ 13k
0
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0
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940
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Comment: C: DEseq2 loading library problem
4.6 years ago Steve Lianoglou ★ 13k
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0
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920
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Comment: C: Help with the output from mnnCorrect
4.6 years ago Steve Lianoglou ★ 13k
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0
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22k
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Comment: C: Log2FC data type error in EnhansedVolcano package
4.6 years ago Steve Lianoglou ★ 13k
3
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2
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1.8k
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Answer: A: Unexpected results while analyzing a subset of genes in GEO RNAseq dataset conta
4.6 years ago Steve Lianoglou ★ 13k
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1
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821
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Comment: C: DESeq2 very high log2foldchange values
4.6 years ago Steve Lianoglou ★ 13k
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0
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1.4k
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Answer: A: Subsetting a data frame generated by topTable() {limma}
4.7 years ago • updated 4.6 years ago Steve Lianoglou ★ 13k
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0
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656
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Comment: C: SGSeq: core dumped after running convertToSGFeatures() method
4.7 years ago Steve Lianoglou ★ 13k
0
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1
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656
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Comment: C: SGSeq: core dumped after running convertToSGFeatures() method
4.7 years ago Steve Lianoglou ★ 13k
2
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1
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3.3k
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Comment: C: Limma residuals matrix
4.7 years ago Steve Lianoglou ★ 13k
1
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1
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3.3k
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Answer: A: Limma residuals matrix
4.7 years ago Steve Lianoglou ★ 13k
1
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1
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2.0k
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Answer: A: How can I delete specific rows (using gene name) from a DESeq2 dataset (or even
4.7 years ago Steve Lianoglou ★ 13k
0
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1
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3.6k
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Comment: C: R Version 3.6.1
4.7 years ago Steve Lianoglou ★ 13k
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1
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3.8k
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Comment: C: how to get normalized count data from edgeR using TMM methods
4.8 years ago Steve Lianoglou ★ 13k
3
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1
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1.8k
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Answer: A: RNA-seq normalization without filtering
4.8 years ago Steve Lianoglou ★ 13k
0
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0
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417
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Comment: C: Mr. Anjan Payra
4.8 years ago Steve Lianoglou ★ 13k
5
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0
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8.2k
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Answer: A: What can I do if I only have TPM but not raw counts data?
4.8 years ago Steve Lianoglou ★ 13k
1
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2
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1.5k
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Answer: A: "Packages required but not available." rtracklayer in OSX is not available to CR
4.8 years ago Steve Lianoglou ★ 13k
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1.8k
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Comment: C: Comparing two different sequencing method by DEseq2
4.8 years ago Steve Lianoglou ★ 13k
1
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2
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1.8k
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Comment: C: Comparing two different sequencing method by DEseq2
4.8 years ago Steve Lianoglou ★ 13k
0
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2
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1.8k
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Answer: A: Comparing two different sequencing method by DEseq2
4.8 years ago Steve Lianoglou ★ 13k
0
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1
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2.6k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
4.9 years ago Steve Lianoglou ★ 13k
0
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1
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2.6k
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Comment: C: error message with BiocManager::install on Mac console that's not on mac command
4.9 years ago Steve Lianoglou ★ 13k
0
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0
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2.3k
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Comment: C: How to determine the cause of no difference between treatments in rnaseq?
4.9 years ago Steve Lianoglou ★ 13k
1
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1
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2.3k
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Comment: C: How to determine the cause of no difference between treatments in rnaseq?
4.9 years ago Steve Lianoglou ★ 13k
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0
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561
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Comment: C: Too many DEGs
4.9 years ago Steve Lianoglou ★ 13k
1
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1
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6.2k
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Answer: A: DESeq2 GLM modelling and Wald's test
4.9 years ago Steve Lianoglou ★ 13k
0
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1
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1.4k
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Comment: C: RNA-Seq and edgeR: remarkable differences between cpms and fitted values
4.9 years ago Steve Lianoglou ★ 13k
0
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1
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1.4k
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Comment: C: RNA-Seq and edgeR: remarkable differences between cpms and fitted values
4.9 years ago Steve Lianoglou ★ 13k
0
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0
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1.4k
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Comment: C: RNA-Seq and edgeR: remarkable differences between cpms and fitted values
4.9 years ago Steve Lianoglou ★ 13k
0
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1
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1.4k
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Comment: C: RNA-Seq and edgeR: remarkable differences between cpms and fitted values
4.9 years ago Steve Lianoglou ★ 13k
1,506 results • Page 2 of 31
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