User: Jenny Drnevich

gravatar for Jenny Drnevich
Jenny Drnevich1.9k
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United States
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10 years, 5 months ago
Email:
d*******@illinois.edu

I work for the High Performance Biological Computing group (HPCBio) in the Carver Biotechnology Center at the University of Illinois, which is a core service center providing state-of-the-art infrastructure for genomic and proteomic research. My areas of expertise are statistical analyses of gene expression data from microarrays and RNA-Seq and post-analysis data mining. I also teach a a recurring workshop on how to analyze and data mine gene expression data.

Posts by Jenny Drnevich

<prev • 261 results • page 1 of 27 • next >
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Comment: C: Easy way to turn OrgDb object from AnnotationHub into package?
... There are different levels of annotation... NCBI does have a genome for Plasmopara halstedii and it has 15,469 predicted proteins (https://www.ncbi.nlm.nih.gov/genome/?term=Plasmopara+halstedii). So there should be the locations for the exons making up these proteins in the .gff file, which is one l ...
written 7 weeks ago by Jenny Drnevich1.9k
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Comment: C: csaw: how to hack filtering windows by negative input controls?
... Hi Aaron, Thanks for your reply. I may try to run through your simulations to see if our dispersions get inflated, but I don’t have a ton of time before the BioC conference next week (and I have to write up my poster on a different experiment!). Maybe we can chat briefly about it in Toronto, if you ...
written 3 months ago by Jenny Drnevich1.9k
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csaw: how to hack filtering windows by negative input controls?
... Hi all, Aaron - thank you for the excellent csaw package and extensive users guide! I am analyzing a ChIPSeq experiment that has 60 IP samples + 60 inputs. There are 3 treatments X 4 brain regions = 12 groups X 5 reps each. It seems a shame not to use the input samples and I was following section 3 ...
csaw written 3 months ago by Jenny Drnevich1.9k • updated 3 months ago by Aaron Lun21k
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Comment: C: Hotels for BioC 2018?
... Thank you! My trip is book. See you this summer… From: Martin Morgan [bioc] <noreply@bioconductor.org> Sent: Wednesday, April 18, 2018 10:27 AM To: Zadeh, Jenny Drnevich <drnevich@illinois.edu> Subject: [bioc] C: Hotels for BioC 2018? Activity on a post you are following on support.bio ...
written 6 months ago by Jenny Drnevich1.9k
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Comment: C: Hotels for BioC 2018?
... Hi Martin, That’s fine, although it could be more explicitly stated on the registration page. Additionally, there is no other location information other than the University of Toronto, which has 3 different campuses. Is this at the downtown St. George Campus? Do you know the building name/side of c ...
written 6 months ago by Jenny Drnevich1.9k • updated 6 months ago by Martin Morgan ♦♦ 22k
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Hotels for BioC 2018?
... Hello, Is there going to be any hotel/accommodation information for BioC2018? I need to let my department know about estimated costs to get approval to attend. I'd like to start planning my trip soon! Thanks, Jenny ...
conference bioc2018 written 6 months ago by Jenny Drnevich1.9k • updated 6 months ago by Martin Morgan ♦♦ 22k
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Job: EXTENDED: Bioinformatics Specialist at the University of Illinois
... We are interested in hiring another analyst that is familiar with handling, processing and analyzing next generation sequencing data. Preference would be for someone with metagenomics/microbiome or epigenomics/bisulfite-Seq to fill out our expertise repertoire, but we would consider anyone with expe ...
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Comment: C: Support site search not finding posts?
... Thanks, Jim! I'll just google from now on. ...
written 8 months ago by Jenny Drnevich1.9k
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Support site search not finding posts?
... Hi, I just had a weird issue with https://support.bioconductor.org/'s search function. I was trying to find an old post I had made to see the recommendations but the search function wasn't coming up with anything. I searched "tximport limma-trend" (words I knew I had put in the title) but the searc ...
search tximport limma-trend written 8 months ago by Jenny Drnevich1.9k • updated 8 months ago by James W. MacDonald48k
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Job: Bioinformatics Specialist at the University of Illinois
... The Roy J. Carver Biotechnology Center has an opening for a Visiting Research Specialist in Life Science in HPCBio. The primary function of the position is to process and analyze 'omics data produced by customers of the HPCBio group. This position is a one year commitment with the potential for ren ...

Latest awards to Jenny Drnevich

Popular Question 5 months ago, created a question with more than 1,000 views. For trouble using select() to get all GO terms when have duplicate query IDs
Popular Question 16 months ago, created a question with more than 1,000 views. For biocLite() fails to update packages when main library not writable
Great Question 16 months ago, created a question with more than 5,000 views. For biocLite() fails to update packages when main library not writable
Popular Question 19 months ago, created a question with more than 1,000 views. For biocLite() upgrade issue when same package in 2 libraries
Popular Question 2.6 years ago, created a question with more than 1,000 views. For biocLite() upgrade issue when same package in 2 libraries
Popular Question 2.6 years ago, created a question with more than 1,000 views. For biocLite() fails to update packages when main library not writable
Popular Question 3.3 years ago, created a question with more than 1,000 views. For biocLite() fails to update packages when main library not writable
Autobiographer 4.1 years ago, has more than 80 characters in the information field of the user's profile.
Centurion 4.2 years ago, created 100 posts.

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