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1.2k
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limma: writing down the matrix in an almost (?) factorial design experiment
Microarray
DOSE
Microarray
DOSE
14.2 years ago
Massimo Pinto
▴ 390
0
votes
0
replies
1.3k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO
hgug4112a
probe
GO
hgug4112a
probe
14.4 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.1k
views
End of the line of GOstats: making sense of the hypergeometric test results now
GO
GO
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
913
views
comparing two or more limma::topTables - in search of a graphical tool
updated 14.5 years ago by
James W. MacDonald
65k • written 14.5 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
826
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation
hgug4112a
Annotation
hgug4112a
14.5 years ago
Massimo Pinto
▴ 390
0
votes
3
replies
1.8k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a
hgug4112a
updated 14.5 years ago by
rgentleman
★ 5.5k • written 14.5 years ago by
Massimo Pinto
▴ 390
0
votes
11
replies
1.8k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a
hgug4112a
updated 14.5 years ago by
Francois Pepin
★ 1.3k • written 14.5 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
9.2k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO
hgug4112a
GO
hgug4112a
updated 14.5 years ago by
James W. MacDonald
65k • written 14.5 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
548
views
From a list of annotated interesting genes to a list of GO's 'interesting' Biological Processes
GOstats
GOstats
14.7 years ago
Massimo Pinto
▴ 390
3
votes
3
replies
2.6k
views
Two interaction coefficients not estimable in limma's lmFit() in a 2^3 factorial design - does this change my contrast matrix now?
limma
limma
updated 14.8 years ago by
James W. MacDonald
65k • written 14.8 years ago by
Massimo Pinto
▴ 390
0
votes
1
reply
804
views
Agi4x44PreProcess probe summarization bug?
updated 14.8 years ago by
Tobias Straub
▴ 430 • written 14.8 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
828
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO
GUI
hgug4112a
limma
PROcess
Agi4x44PreProcess
GO
GUI
hgug4112a
limma
PROcess
14.8 years ago
Massimo Pinto
▴ 390
0
votes
8
replies
1.8k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 14.9 years ago by
Steve Lianoglou
★ 13k • written 14.9 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
968
views
limma and matrix design for single channel arrays - in search of a primer.
Microarray
limma
Agi4x44PreProcess
Microarray
limma
Agi4x44PreProcess
updated 15.0 years ago by
James W. MacDonald
65k • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
3
replies
1.1k
views
read.targets() in the Agi4x44PreProcess package
Agi4x44PreProcess
Agi4x44PreProcess
updated 15.0 years ago by
Pedro Lopez-Romero
▴ 120 • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
3
replies
1.1k
views
Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList (re-posted, due to earlier post failure)
Agi4x44PreProcess
Agi4x44PreProcess
updated 15.0 years ago by
Pedro Lopez-Romero
▴ 120 • written 15.0 years ago by
Massimo Pinto
▴ 390
0
votes
0
replies
652
views
Agi4x44PreProcess: filtration of probes using filter.probes() returns an empty RGList.
Agi4x44PreProcess
Agi4x44PreProcess
15.0 years ago
Massimo Pinto
▴ 390
0
votes
4
replies
2.2k
views
error while loading the genefilter package [R 2.8.1. on Mac OSX 10.5.6]
genefilter
genefilter
updated 15.1 years ago by
Patrick Aboyoun
★ 1.6k • written 15.1 years ago by
Massimo Pinto
▴ 390
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