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604
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Comment: Comment: ChIPpeakAnno annotatePeakInBatch output
6 months ago Julie Zhu ★ 4.3k
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0
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1.0k
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Answer: Answer: Option to override removal of duplicate reads - GUIDEseq
22 months ago Julie Zhu ★ 4.3k
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1
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1.0k
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Comment: Comment: Option to override removal of duplicate reads - GUIDEseq
22 months ago Julie Zhu ★ 4.3k
0
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1
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1.0k
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Answer: Answer: Option to override removal of duplicate reads - GUIDEseq
22 months ago Julie Zhu ★ 4.3k
0
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0
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564
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Answer: Answer: GUIDEseq - Error combining individual steps into the pipeline
2.0 years ago Julie Zhu ★ 4.3k
0
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0
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907
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Answer: Answer: CRISPRseek package: offTargetAnalysis() error with mouse genome
2.5 years ago Julie Zhu ★ 4.3k
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1
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1.6k
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Comment: Comment: Annotation by CHIPeakAnno tool
2.9 years ago Julie Zhu ★ 4.3k
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1
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1.6k
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Comment: Comment: Annotation of 100kb region
2.9 years ago Julie Zhu ★ 4.3k
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1
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1.6k
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Comment: Comment: Annotation of 100kb region
2.9 years ago Julie Zhu ★ 4.3k
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0
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931
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Comment: Comment: genomicElementDistribution function not found
2.9 years ago Julie Zhu ★ 4.3k
0
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0
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769
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Answer: Answer: CRISPRseek package: 5’ PAM?
3.1 years ago Julie Zhu ★ 4.3k
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0
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1.2k
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Comment: Comment: Question about nearest function in R package IRanges
3.2 years ago Julie Zhu ★ 4.3k
3
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0
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660
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Answer: Answer: Major on-target peak not appearing in GUIDEseq results
3.3 years ago Julie Zhu ★ 4.3k
0
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0
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867
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Answer: Answer: getUniqueCleavageEvents() not working in GUIDEseq package
3.3 years ago Julie Zhu ★ 4.3k
0
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0
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867
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Answer: Answer: getUniqueCleavageEvents() not working in GUIDEseq package
3.3 years ago Julie Zhu ★ 4.3k
1
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1
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2.7k
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Comment: Comment: CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRan
3.4 years ago Julie Zhu ★ 4.3k
0
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1
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2.7k
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Comment: Comment: CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRan
3.4 years ago Julie Zhu ★ 4.3k
0
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1
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2.7k
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Comment: Comment: CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRan
3.4 years ago Julie Zhu ★ 4.3k
2
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1
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876
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Answer: Answer: Improving the run-time of offTargetAnalysis()
3.5 years ago Julie Zhu ★ 4.3k
0
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0
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681
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Answer: Answer: Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
3.5 years ago Julie Zhu ★ 4.3k
3
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0
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786
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Answer: Answer: CRISPRSeek Results files column interpretation
3.5 years ago Julie Zhu ★ 4.3k
0
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0
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635
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Answer: A: CRISPRseek base editor
3.6 years ago Julie Zhu ★ 4.3k
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1
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2.0k
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Comment: C: gRNAefficacy calculations in CRISPRseek
3.6 years ago Julie Zhu ★ 4.3k
0
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0
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2.0k
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Comment: C: gRNAefficacy calculations in CRISPRseek
3.6 years ago Julie Zhu ★ 4.3k
0
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1
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2.0k
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Comment: C: gRNAefficacy calculations in CRISPRseek
3.6 years ago Julie Zhu ★ 4.3k
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2
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2.0k
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Comment: C: gRNAefficacy calculations in CRISPRseek
3.6 years ago Julie Zhu ★ 4.3k
0
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1
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2.0k
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Comment: C: gRNAefficacy calculations in CRISPRseek
3.6 years ago Julie Zhu ★ 4.3k
1
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1
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2.0k
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Answer: A: gRNAefficacy calculations in CRISPRseek
3.7 years ago Julie Zhu ★ 4.3k
1
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0
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2.0k
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Answer: A: gRNAefficacy calculations in CRISPRseek
3.7 years ago Julie Zhu ★ 4.3k
0
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0
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1.9k
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Answer: A: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
3.7 years ago Julie Zhu ★ 4.3k
1
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1
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1.9k
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Answer: A: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
3.7 years ago Julie Zhu ★ 4.3k
1
vote
1
reply
2.0k
views
Answer: A: gRNAefficacy calculations in CRISPRseek
3.7 years ago Julie Zhu ★ 4.3k
0
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1
reply
1.9k
views
Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
3.7 years ago Julie Zhu ★ 4.3k
0
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1
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1.2k
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Answer: A: How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQ
3.7 years ago Julie Zhu ★ 4.3k
0
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1
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1.9k
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Comment: C: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
3.7 years ago Julie Zhu ★ 4.3k
1
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1
reply
1.9k
views
Answer: A: counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
3.7 years ago Julie Zhu ★ 4.3k
0
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1
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2.0k
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Comment: C: ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
3.7 years ago Julie Zhu ★ 4.3k
0
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0
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9.4k
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Answer: A: Interpreting TSS Enrichment Score Summary
3.8 years ago Julie Zhu ★ 4.3k
1
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0
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1.5k
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Comment: C: CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coerci
3.9 years ago Julie Zhu ★ 4.3k
0
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1
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1.5k
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Comment: C: CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coerci
3.9 years ago Julie Zhu ★ 4.3k
0
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1
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1.5k
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Comment: C: CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coerci
3.9 years ago Julie Zhu ★ 4.3k
1
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1
reply
1.5k
views
Comment: C: CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coerci
4.0 years ago Julie Zhu ★ 4.3k
0
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1
reply
796
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Answer: A: CRISPRseek adjustments for Cpf1/Cas12a
4.0 years ago Julie Zhu ★ 4.3k
1
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0
replies
796
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Answer: A: CRISPRseek adjustments for Cpf1/Cas12a
4.0 years ago Julie Zhu ★ 4.3k
1
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1
reply
1.5k
views
Answer: A: CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coerci
4.0 years ago Julie Zhu ★ 4.3k
0
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1
reply
767
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Answer: A: gRNA design for prime editing using CRISPRseek
4.0 years ago Julie Zhu ★ 4.3k
0
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0
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2.5k
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Comment: C: problem to load data into ChIPpeakAnno
4.1 years ago Julie Zhu ★ 4.3k
0
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0
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814
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Answer: A: CRISPRseek - adding CRISPRscan score
4.5 years ago • updated 4.2 years ago Julie Zhu ★ 4.3k
0
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0
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1.1k
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Comment: C: QuasR::qAlign: how to specify maximum allowed number of mismatches and output al
4.4 years ago Julie Zhu ★ 4.3k
0
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3
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1.1k
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QuasR::qAlign: how to specify maximum allowed number of mismatches and output all alignments
QuasR
updated 4.4 years ago by ▴ 350 • written 4.5 years ago by ★ 4.3k
660 results • Page 1 of 14
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