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Question about DESeq2 version updates
deseq
updated 10.0 years ago by 42k • written 10.0 years ago by ▴ 240
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Answer: A: HTSeq-Count
10.0 years ago Yuan Hao ▴ 240
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Answer: A: HTSeq-Count
10.0 years ago Yuan Hao ▴ 240
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Comment: C: DESeq2 transcript level
10.4 years ago Yuan Hao ▴ 240
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Answer: A: Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
11.2 years ago Yuan Hao ▴ 240
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.3 years ago Yuan Hao ▴ 240
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Answer: A: GOstats: get genes for correspond� ing enriched GO term
12.2 years ago Yuan Hao ▴ 240
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Answer: A: ChIPpeakAnno on pathway enrichment
12.5 years ago Yuan Hao ▴ 240
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Comment: C: Help with promoter analysis
12.6 years ago Yuan Hao ▴ 240
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Comment: C: Help with promoter analysis
12.6 years ago Yuan Hao ▴ 240
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Answer: A: how split a matrix
12.6 years ago Yuan Hao ▴ 240
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Answer: A: how to remove affymetrix control probe sets from a an expression set
12.6 years ago Yuan Hao ▴ 240
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1.6k
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Bug report.
GO GO
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 240
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3.3k
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Comment: C: how to extract promoter regions and detect motif occurrence counts?
12.9 years ago Yuan Hao ▴ 240
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Comment: C: NGS service providers
13.2 years ago Yuan Hao ▴ 240
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Answer: A: PreFiltering probe in microarray analysis
13.3 years ago Yuan Hao ▴ 240
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Answer: A: removal of affymetrix control probes from ExpressionSet
13.4 years ago Yuan Hao ▴ 240
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Answer: A: GO enrichment and pathways
13.4 years ago Yuan Hao ▴ 240
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Comment: C: Affy chip annotation changes
13.9 years ago Yuan Hao ▴ 240
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1.3k
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filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 13.9 years ago by ▴ 80 • written 13.9 years ago by ▴ 240
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1.2k
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Comment: C: Affy chip annotation changes
13.9 years ago Yuan Hao ▴ 240
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Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 13.9 years ago by 67k • written 13.9 years ago by ▴ 240
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911
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How to get all qualified GEO Platform records in R
hgu133a GEOquery hgu133a GEOquery
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 240
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3.7k
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Comment: C: removal of genes with low expression values
14.2 years ago Yuan Hao ▴ 240
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2.7k
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Batch effect in limma
Clustering Clustering
updated 15.1 years ago by 67k • written 15.1 years ago by ▴ 240
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