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Question about DESeq2 version updates
deseq
updated 10.5 years ago by 43k • written 10.5 years ago by ▴ 240
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Answer: A: HTSeq-Count
10.6 years ago Yuan Hao ▴ 240
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Answer: A: HTSeq-Count
10.6 years ago Yuan Hao ▴ 240
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Comment: C: DESeq2 transcript level
10.9 years ago Yuan Hao ▴ 240
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Answer: A: Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
11.7 years ago Yuan Hao ▴ 240
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Comment: C: [Bioc] RNAseq less sensitive than microarrays? Is it a statistical issue?
11.9 years ago Yuan Hao ▴ 240
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Answer: A: GOstats: get genes for correspond� ing enriched GO term
12.7 years ago Yuan Hao ▴ 240
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Answer: A: ChIPpeakAnno on pathway enrichment
13.1 years ago Yuan Hao ▴ 240
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Comment: C: Help with promoter analysis
13.1 years ago Yuan Hao ▴ 240
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Comment: C: Help with promoter analysis
13.1 years ago Yuan Hao ▴ 240
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Answer: A: how split a matrix
13.1 years ago Yuan Hao ▴ 240
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Answer: A: how to remove affymetrix control probe sets from a an expression set
13.1 years ago Yuan Hao ▴ 240
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1.6k
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Bug report.
GO GO
updated 13.3 years ago by 21k • written 13.3 years ago by ▴ 240
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Comment: C: how to extract promoter regions and detect motif occurrence counts?
13.4 years ago Yuan Hao ▴ 240
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Comment: C: NGS service providers
13.7 years ago Yuan Hao ▴ 240
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Answer: A: PreFiltering probe in microarray analysis
13.8 years ago Yuan Hao ▴ 240
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Answer: A: removal of affymetrix control probes from ExpressionSet
13.9 years ago Yuan Hao ▴ 240
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Answer: A: GO enrichment and pathways
14.0 years ago Yuan Hao ▴ 240
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Comment: C: Affy chip annotation changes
14.4 years ago Yuan Hao ▴ 240
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filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 14.4 years ago by ▴ 80 • written 14.4 years ago by ▴ 240
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1.4k
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Comment: C: Affy chip annotation changes
14.4 years ago Yuan Hao ▴ 240
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Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 240
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How to get all qualified GEO Platform records in R
hgu133a GEOquery hgu133a GEOquery
updated 14.6 years ago by 21k • written 14.6 years ago by ▴ 240
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Comment: C: removal of genes with low expression values
14.7 years ago Yuan Hao ▴ 240
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Batch effect in limma
Clustering Clustering
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 240
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