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Comment: C: biomaRt connection problems
13.9 years ago michael watson IAH-C ★ 3.4k
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biomaRt connection problems
biomaRt biomaRt
updated 13.9 years ago by 21k • written 13.9 years ago by ★ 3.4k
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Comment: C: different color for a subset of points on heatmap
13.9 years ago michael watson IAH-C ★ 3.4k
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Answer: A: question about limma
13.9 years ago michael watson IAH-C ★ 3.4k
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3.4k
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DESeq and number of replicates required for RNA-Seq
GO DESeq GO DESeq
updated 13.9 years ago by ★ 6.0k • written 13.9 years ago by ★ 3.4k
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Comment: C: DESeq and number of replicates required for RNA-Seq
13.9 years ago michael watson IAH-C ★ 3.4k
0
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3.4k
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Comment: C: DESeq and number of replicates required for RNA-Seq
13.9 years ago michael watson IAH-C ★ 3.4k
0
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1
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3.4k
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Comment: C: DESeq and number of replicates required for RNA-Seq
13.9 years ago michael watson IAH-C ★ 3.4k
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2
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1.2k
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Answer: A: Using Gostats on a new organism
13.9 years ago michael watson IAH-C ★ 3.4k
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Comment: C: DESeq and number of replicates required for RNA-Seq
13.9 years ago michael watson IAH-C ★ 3.4k
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Comment: C: is there a 1:1 correspondence between ENST and 3'UTR sequence ?
13.9 years ago michael watson IAH-C ★ 3.4k
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Comment: C: DESeq and number of replicates required for RNA-Seq
13.9 years ago michael watson IAH-C ★ 3.4k
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2.0k
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Comment: C: Experimental design for RNA-Seq
14.0 years ago michael watson IAH-C ★ 3.4k
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Answer: A: R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
14.0 years ago michael watson IAH-C ★ 3.4k
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997
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Answer: A: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
14.0 years ago michael watson IAH-C ★ 3.4k
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Comment: C: Experimental design for RNA-Seq
14.0 years ago michael watson IAH-C ★ 3.4k
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8
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2.0k
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Experimental design for RNA-Seq
edgeR DEGseq DESeq edgeR DEGseq DESeq
updated 14.0 years ago by ★ 6.0k • written 14.0 years ago by ★ 3.4k
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Comment: C: Human, Mouse and Rat homologs
14.0 years ago michael watson IAH-C ★ 3.4k
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GEOquery: invalid class "ExpressionSet" object: featureNames differ between assayData and featureData
14.0 years ago michael watson IAH-C ★ 3.4k
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0
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985
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Answer: A: R: Validated miRNAs revisited
14.0 years ago michael watson IAH-C ★ 3.4k
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698
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Answer: A: Validated miRNAs revisited
14.0 years ago michael watson IAH-C ★ 3.4k
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2.6k
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Answer: A: converting position from '-' strand to '+' strand
14.1 years ago michael watson IAH-C ★ 3.4k
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1.3k
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Answer: A: how to do cross species annotation?
14.2 years ago michael watson IAH-C ★ 3.4k
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908
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Answer: A: Get gene structure information: use biomaRt or other annotation packages?
14.2 years ago michael watson IAH-C ★ 3.4k
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908
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Answer: A: Get gene structure information: use biomaRt or other annotation packages?
14.2 years ago michael watson IAH-C ★ 3.4k
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0
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2.0k
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Comment: C: microRNA: which genes code for a specific mirna?
14.2 years ago michael watson IAH-C ★ 3.4k
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2.1k
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Comment: C: hclust for 13000 genes
14.2 years ago michael watson IAH-C ★ 3.4k
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2.1k
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Answer: A: hclust for 13000 genes
14.2 years ago michael watson IAH-C ★ 3.4k
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1.4k
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Answer: A: log Fold Change
14.2 years ago michael watson IAH-C ★ 3.4k
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2
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1.9k
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Comment: C: Issue with limma and normalization of Agilent data generated with a 20-bit scan
14.2 years ago michael watson IAH-C ★ 3.4k
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Comment: C: where to download 'probeset.cvs' file for creating scheme file
14.2 years ago michael watson IAH-C ★ 3.4k
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Answer: A: chip-seq data analysis
14.2 years ago michael watson IAH-C ★ 3.4k
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3.3k
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Comment: C: heatmap for high number of genes
14.2 years ago michael watson IAH-C ★ 3.4k
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984
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Comment: C: pair information of microRNA and Targets prediction
14.2 years ago michael watson IAH-C ★ 3.4k
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1.2k
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Comment: C: Query
14.2 years ago michael watson IAH-C ★ 3.4k
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1.2k
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Comment: C: Query
14.2 years ago michael watson IAH-C ★ 3.4k
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1
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1.2k
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Answer: A: Query
14.2 years ago michael watson IAH-C ★ 3.4k
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1
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1.8k
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Comment: C: BLAST E-value
14.2 years ago michael watson IAH-C ★ 3.4k
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1
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1.8k
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Answer: A: BLAST E-value
14.2 years ago michael watson IAH-C ★ 3.4k
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1.3k
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Comment: C: DNA micro-array normalization
14.2 years ago michael watson IAH-C ★ 3.4k
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2
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1.3k
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Answer: A: DNA micro-array normalization
14.2 years ago michael watson IAH-C ★ 3.4k
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1.9k
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Comment: C: GO terms
14.2 years ago michael watson IAH-C ★ 3.4k
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964
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Comparing gene set enrichment lists / GO terms
Microarray GO PROcess Microarray GO PROcess
14.3 years ago michael watson IAH-C ★ 3.4k
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2.4k
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Comment: C: GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?
14.3 years ago michael watson IAH-C ★ 3.4k
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Comment: C: Is there a way of counting a miRNA binding sites in a target gene
14.3 years ago michael watson IAH-C ★ 3.4k
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1.3k
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Comment: C: link to KEGG
14.3 years ago michael watson IAH-C ★ 3.4k
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1
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2.4k
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Answer: A: GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?
14.3 years ago michael watson IAH-C ★ 3.4k
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0
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1.5k
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Comment: C: Distinguish Synonymous vs. Non-synonymous SNPs
14.3 years ago michael watson IAH-C ★ 3.4k
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1
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1.7k
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Comment: C: problem with data processing in R
14.4 years ago michael watson IAH-C ★ 3.4k
0
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0
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699
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Bioinformatics position at the Institute for Animal Health, UK
14.5 years ago michael watson IAH-C ★ 3.4k
337 results • Page 1 of 7
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