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454
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Comment: Comment: Sample quality weights for RNA-seq
13 months ago Naomi Altman ★ 6.0k
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6
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454
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Sample quality weights for RNA-seq
DESeq2 limma weight
13 months ago Naomi Altman ★ 6.0k
0
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0
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454
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Comment: Comment: Sample quality weights for RNA-seq
13 months ago Naomi Altman ★ 6.0k
0
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1
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454
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Comment: Comment: Sample quality weights for RNA-seq
13 months ago Naomi Altman ★ 6.0k
0
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2
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1.5k
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Getting annotation into GOstat
Transcription Transcription
updated 4.3 years ago by • 0 • written 9.6 years ago by ★ 6.0k
0
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1
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1.7k
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Comment: C: edgeR multiple contrasts Vs. One test
updated 4.4 years ago by 45k • written 8.9 years ago by ★ 6.0k
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5
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4.0k
views
unable to install biocLite or BiocInstaller
updated 6.6 years ago by • 0 • written 8.4 years ago by ★ 6.0k
0
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1
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1.3k
views
Comment: C: GWAS with family data
8.1 years ago Naomi Altman ★ 6.0k
0
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0
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882
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Comment: C: GWASdata
8.1 years ago Naomi Altman ★ 6.0k
0
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4
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1.3k
views
GWAS with family data
updated 8.1 years ago by ★ 1.3k • written 8.1 years ago by ★ 6.0k
0
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1
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882
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Answer: A: GWASdata
8.1 years ago Naomi Altman ★ 6.0k
0
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4
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882
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GWASdata
SNP affy SNP affy
8.1 years ago Naomi Altman ★ 6.0k
0
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1
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1.6k
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Comment: C: biocLite installing to tmp directory
8.1 years ago Naomi Altman ★ 6.0k
1
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3
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1.6k
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biocLite installing to tmp directory
updated 8.1 years ago by 59k • written 8.1 years ago by ★ 6.0k
0
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3
replies
1.1k
views
DiffBind counts
DiffBind DiffBind
updated 8.1 years ago by ★ 4.4k • written 8.1 years ago by ★ 6.0k
0
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0
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1.1k
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Comment: C: DiffBind counts
8.1 years ago Naomi Altman ★ 6.0k
1
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1
reply
942
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matching Entrez-IDs to Affy probesets using biomaRt
biomaRt biomaRt
updated 8.2 years ago by ★ 7.2k • written 8.2 years ago by ★ 6.0k
0
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2
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658
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biomaRt and rma
biomaRt biomaRt
updated 8.2 years ago by 59k • written 8.2 years ago by ★ 6.0k
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0
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658
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Answer: A: biomaRt and rma
8.2 years ago Naomi Altman ★ 6.0k
0
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0
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4.0k
views
Comment: C: unable to install biocLite or BiocInstaller
8.3 years ago Naomi Altman ★ 6.0k
0
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0
replies
866
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Comment: C: technical + biological replicate design for multiple categories
8.9 years ago Naomi Altman ★ 6.0k
0
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0
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599
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Answer: A: What is the FDR set to for the BH method.
8.9 years ago Naomi Altman ★ 6.0k
0
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0
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866
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Answer: A: technical + biological replicate design for multiple categories
8.9 years ago Naomi Altman ★ 6.0k
0
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0
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1.2k
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Answer: A: Different number of differentially expressed genes after using ComBat in 'sva' f
8.9 years ago Naomi Altman ★ 6.0k
0
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2
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600
views
qvalue pi0 computation
updated 9.3 years ago by 59k • written 9.3 years ago by ★ 6.0k
0
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1
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574
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Creating annotation database for GOstat
Annotation GO Annotation GO
updated 9.3 years ago by 59k • written 9.3 years ago by ★ 6.0k
0
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1
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829
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Comment: C: Limma analyses;paired and/or factorial design?
10.0 years ago Naomi Altman ★ 6.0k
0
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1
reply
656
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Answer: A: Limma and negative p-values
10.2 years ago Naomi Altman ★ 6.0k
0
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1
reply
1.5k
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Answer: A: fisher exact test pairwise comparisons
10.2 years ago Naomi Altman ★ 6.0k
0
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0
replies
918
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Answer: A: error in using random forest
10.2 years ago Naomi Altman ★ 6.0k
0
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0
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918
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Comment: C: error in using random forest
10.2 years ago Naomi Altman ★ 6.0k
0
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0
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893
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Answer: A: DEseq
10.3 years ago Naomi Altman ★ 6.0k
0
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1
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597
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Answer: A: Two populations on microarray
10.3 years ago Naomi Altman ★ 6.0k
0
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1
reply
730
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Answer: A: Separating channels of a two-color microarray
10.3 years ago Naomi Altman ★ 6.0k
0
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2
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839
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Comment: C: Limma question_Intra-Spot Correlation Question
10.3 years ago Naomi Altman ★ 6.0k
0
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0
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566
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Comment: C: Two populations on microarray
10.3 years ago Naomi Altman ★ 6.0k
0
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0
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566
views
Comment: C: Two populations on microarray
10.3 years ago Naomi Altman ★ 6.0k
0
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1
reply
722
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Answer: A: edgeR on differentially expressed genes with low read counts
10.5 years ago Naomi Altman ★ 6.0k
0
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0
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7.2k
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Answer: A: DESeq adjusted pvalue calculation / filtering data
10.5 years ago Naomi Altman ★ 6.0k
0
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0
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536
views
Comment: C: density plot of pm values
10.5 years ago Naomi Altman ★ 6.0k
0
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1
reply
7.2k
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Comment: C: DESeq adjusted pvalue calculation / filtering data
10.5 years ago Naomi Altman ★ 6.0k
0
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0
replies
666
views
Faculty position at Penn State (Bioinformatics and/or Statistics)
10.6 years ago Naomi Altman ★ 6.0k
0
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0
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1.0k
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Answer: A: Clustering of 30,000+ genes
10.7 years ago Naomi Altman ★ 6.0k
0
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1
reply
596
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negative correlation?
limma limma
10.9 years ago Naomi Altman ★ 6.0k
0
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0
replies
596
views
Answer: A: negative correlation?
10.9 years ago Naomi Altman ★ 6.0k
0
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1
reply
459
views
biocLite and limma
limma limma
updated 10.9 years ago by 59k • written 10.9 years ago by ★ 6.0k
0
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1
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607
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Answer: A: about limma linear models
11.0 years ago Naomi Altman ★ 6.0k
1
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0
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7.5k
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Answer: A: coefficient not estimable (limma warning)
11.0 years ago Naomi Altman ★ 6.0k
0
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0
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417
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more on reference manual
11.0 years ago Naomi Altman ★ 6.0k
0
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0
replies
460
views
reference manual
11.0 years ago Naomi Altman ★ 6.0k
601 results • Page 1 of 13
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