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Answer: Answer: seqinfo got changed after `library(rtracklayer)`
2.4 years ago Michael Lawrence ★ 11k
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0
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915
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Comment: Comment: How to apply a function to a RleViesList object?
2.6 years ago Michael Lawrence ★ 11k
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0
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1.1k
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Comment: Comment: how to get genomic coordinates from an MIndex object
2.7 years ago Michael Lawrence ★ 11k
2
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1
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1.1k
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Answer: Answer: how to get genomic coordinates from an MIndex object
2.7 years ago Michael Lawrence ★ 11k
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1
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1.4k
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Comment: Comment: IRanges::findOverlapPairs cannot take inputs if they are too large
3.0 years ago Michael Lawrence ★ 11k
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1
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1.4k
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Answer: Answer: IRanges::findOverlapPairs cannot take inputs if they are too large
3.0 years ago Michael Lawrence ★ 11k
1
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1
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1.6k
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Answer: Answer: liftOver bug, reproducible
3.2 years ago Michael Lawrence ★ 11k
0
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1
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812
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Comment: Comment: I am getting a segfault reading a SBML file with rsbml_read
3.3 years ago Michael Lawrence ★ 11k
0
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1
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1.6k
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Comment: Comment: `ggbio` package can't be installed
3.3 years ago Michael Lawrence ★ 11k
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0
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888
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Answer: Answer: Average coverage between multiple samples
3.4 years ago Michael Lawrence ★ 11k
2
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1
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1.0k
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Answer: Answer: Recycling a DNAStringSet over an IRangesList in extractAt()
3.4 years ago Michael Lawrence ★ 11k
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0
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4.0k
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Comment: Comment: RStudio vs R: using rtracklayer to import bigwig files from http works in R but
3.4 years ago Michael Lawrence ★ 11k
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0
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3.8k
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Answer: A: How do I subset a GRanges object based on chromosome (and approximate region)?
3.7 years ago Michael Lawrence ★ 11k
1
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0
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1.5k
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Comment: C: GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
3.7 years ago Michael Lawrence ★ 11k
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1
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1.5k
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Comment: C: GRanges/GFeatures: Retain all parent columns in cdsByOverlaps output
3.7 years ago Michael Lawrence ★ 11k
1
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0
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1.9k
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Comment: C: Compare ranges from two GRanges and check if the ranges from the first GRanges i
3.9 years ago Michael Lawrence ★ 11k
1
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1
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1.9k
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Comment: C: Compare ranges from two GRanges and check if the ranges from the first GRanges i
3.9 years ago Michael Lawrence ★ 11k
1
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0
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1.9k
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Comment: C: Compare ranges from two GRanges and check if the ranges from the first GRanges i
3.9 years ago Michael Lawrence ★ 11k
0
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1
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1.0k
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Answer: A: How to create GRanges for TES
4.0 years ago Michael Lawrence ★ 11k
3
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0
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1.9k
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Comment: C: How to extract positions present in one genomic ranges object and not the other?
4.0 years ago Michael Lawrence ★ 11k
2
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1
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1.5k
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Answer: A: Genomic Ranges: Convert from 0-base to 1-base
4.0 years ago Michael Lawrence ★ 11k
1
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0
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2.2k
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Answer: A: Rtracklayer exporting Granges object as bigwig error: Features cannot overlap
4.0 years ago Michael Lawrence ★ 11k
0
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1
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1.7k
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Comment: C: Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package
4.1 years ago Michael Lawrence ★ 11k
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0
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746
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Comment: C: Does biovizBase contain a genesymbol data set for other model organisms?
4.1 years ago Michael Lawrence ★ 11k
0
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0
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1.9k
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Comment: C: rtracklayer: error in importing bigwig file in r in windows
4.1 years ago Michael Lawrence ★ 11k
0
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0
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765
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Answer: A: getting snp and restriction Enzyme site from ucsc genome browswer
4.2 years ago Michael Lawrence ★ 11k
1
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1
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1.7k
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Answer: A: S4Vectors not loading
4.2 years ago Michael Lawrence ★ 11k
1
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0
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1.7k
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Comment: C: S4Vectors not loading
4.2 years ago Michael Lawrence ★ 11k
0
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0
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2.1k
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Comment: C: rsbml fails to compile on Linux due to ParseMessage.h undetected with libSBML 5
4.2 years ago Michael Lawrence ★ 11k
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2
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1.9k
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Answer: A: GenomicRanges: Find first, second and third nearest genes
4.2 years ago Michael Lawrence ★ 11k
1
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0
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636
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Answer: A: Rtracklayer fails to export TxDb as GFF3 without CDS
4.2 years ago Michael Lawrence ★ 11k
3
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1
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1.0k
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Answer: A: GenomicRanges: Find N nearest/preceding/following ranges
4.2 years ago Michael Lawrence ★ 11k
0
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0
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935
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Comment: C: Resize exons in transcript to total width
4.4 years ago Michael Lawrence ★ 11k
0
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1
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935
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Answer: A: Resize exons in transcript to total width
4.4 years ago Michael Lawrence ★ 11k
0
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1
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824
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Answer: A: ggbio tracks not aligned when legend present in one track
4.4 years ago Michael Lawrence ★ 11k
0
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0
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649
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Comment: C: An error while finding pintersect()
4.4 years ago Michael Lawrence ★ 11k
1
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1
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840
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Answer: A: rtracklayer::export empty score
4.4 years ago Michael Lawrence ★ 11k
1
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0
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1.6k
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Comment: C: How to query a base along an aligned read by genomic position?
4.5 years ago Michael Lawrence ★ 11k
1
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1
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1.6k
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Comment: C: How to query a base along an aligned read by genomic position?
4.5 years ago Michael Lawrence ★ 11k
0
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1
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1.7k
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Comment: C: Annotating GRanges with TxDb gene models using plyranges
4.5 years ago Michael Lawrence ★ 11k
0
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0
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1.5k
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Answer: A: Coverage function assigns wrong weights for gapped alignments
4.5 years ago Michael Lawrence ★ 11k
0
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0
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1.1k
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Comment: C: Can GenomicRanges findOverlaps ignore seqnames?
4.5 years ago Michael Lawrence ★ 11k
0
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0
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1.6k
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Comment: C: Best way to subset one IRanges by list of IRanges
4.6 years ago Michael Lawrence ★ 11k
0
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1
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1.6k
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Comment: C: Best way to subset one IRanges by list of IRanges
4.6 years ago Michael Lawrence ★ 11k
0
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1
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1.6k
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Comment: C: Best way to subset one IRanges by list of IRanges
4.6 years ago Michael Lawrence ★ 11k
1
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2
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2.4k
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Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
4.6 years ago Michael Lawrence ★ 11k
1
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0
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796
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Comment: C: Checking if to DataFrames are identical
4.6 years ago Michael Lawrence ★ 11k
1
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1
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948
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Answer: A: Is it useful to define and export a setAs('BSgenome', 'GRanges')
4.6 years ago Michael Lawrence ★ 11k
1
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1
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2.4k
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Comment: C: Subsetting a GenomicRanges::GRanges with "%in%" fails
4.6 years ago Michael Lawrence ★ 11k
0
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0
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1.9k
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Answer: A: Filtering GFF3 file
4.6 years ago Michael Lawrence ★ 11k
1,381 results • Page 1 of 28
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